Stan NMR blog A Random Mapping Statistics and a Related Identity

		BioNMR > NMR community > News from NMR blogs
[Stan NMR blog] A Random Mapping Statistics and a Related Identity

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

06-02-2014, 10:02 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,188

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

A Random Mapping Statistics and a Related Identity

A Random Mapping Statistics and a Related Identity

A discrete statistic and new decompositions of unity and of n^n.

Source: Stan blog library

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Texas A&M Statistics Names Inaugural Kshirsagar Fellowship Recipients - Texas A&M University http://www.bionmr.com//nt0.ggpht.com/news/tbn/LM8yxwpjgsSWLM/6.jpg Texas A&M University <img alt="" height="1" width="1" /> Texas A&M Statistics Names Inaugural Kshirsagar Fellowship Recipients Texas A&M University Her research under advisor Dr. Faming Liang involves Monte Carlo method, which she is employing in her current project on nuclear magnetic resonance (NMR) protein structure determination. Cheng plans to graduate next May and hopes to continue to do ... Texas A&M Statistics Names Inaugural Kshirsagar Fellowship Recipients - Texas A&M University	nmrlearner	Online News	0	11-21-2012 04:33 AM
Random sampling in multidimensional NMR spectroscopy Random sampling in multidimensional NMR spectroscopy Publication year: 2010 Source:Progress in Nuclear Magnetic Resonance Spectroscopy, Volume 57, Issue 4</br> Krzysztof Kazimierczuk, Jan Stanek, Anna Zawadzka-Kazimierczuk, Wiktor Ko?mi?ski</br> </br> </br></br>	nmrlearner	Journal club	0	03-09-2012 09:16 AM
[Question from NMRWiki Q&A forum] What is the violation statistics best practice? What is the violation statistics best practice? I am wondering whether anyone knows if there is an established "best practice" on how many restraint violations (distance and dihedral angle) are acceptable in a refined ensemble. Specifically, I currently have an ensemble average of 4.8 distance restraint violations greater than 0.2 Angstroms, with no violations greater than 0.4 Angstroms. For dihedral angles, I have an ensemble average of 1.5 violations greater than 5 degrees, with the greatest violation having a value of 7.9 degrees. Do these values seem reasonable? Check if...	nmrlearner	News from other NMR forums	0	07-19-2011 09:52 AM
[KPWU blog] statistics of NMR/X-ray determined protein structures in PDB (up to May 10, 2011) statistics of NMR/X-ray determined protein structures in PDB (up to May 10, 2011) Two brief plots of protein structures (protein-DNA/RNA/ligand complexes are excluded) determined by either X-ray or NMR. Structures determined by hybrid method are not counted in the two plots. The dataset was obtain from PDB based on its released statistics by May 10th, 2011. Molecules with sequence length longer than 1200 residues are also excluded. There http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=380&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.	nmrlearner	News from NMR blogs	0	05-17-2011 08:30 AM
[NMR paper] A random graph approach to NMR sequential assignment. A random graph approach to NMR sequential assignment. Related Articles A random graph approach to NMR sequential assignment. J Comput Biol. 2005 Jul-Aug;12(6):569-83 Authors: Bailey-Kellogg C, Chainraj S, Pandurangan G Nuclear magnetic resonance (NMR) spectroscopy allows scientists to study protein structure, dynamics and interactions in solution. A necessary first step for such applications is determining the resonance assignment, mapping spectral data to atoms and residues in the primary sequence. Automated resonance assignment algorithms...	nmrlearner	Journal club	0	12-01-2010 06:56 PM
[NMR paper] An NMR spectroscopic identity test for the control of the capsular polysaccharide fro An NMR spectroscopic identity test for the control of the capsular polysaccharide from Haemophilus influenzae type b. Related Articles An NMR spectroscopic identity test for the control of the capsular polysaccharide from Haemophilus influenzae type b. Biologicals. 2000 Sep;28(3):175-83 Authors: Lemercinier X, Jones C We describe the use of Nuclear Magnetic Resonance (NMR) spectroscopy to control the identity of purified bulk capsular polysaccharide from Haemophilus influenzae type b (Hib), and derivatised forms, used in the production of Hib...	nmrlearner	Journal club	0	11-19-2010 08:29 PM
[Stan NMR blog] p-Quantum Transitions and a Combinatorial Identity p-Quantum Transitions and a Combinatorial Identity Example of a combinatorial identity stemming from a practical problem More...	nmrlearner	News from NMR blogs	0	08-21-2010 06:14 PM
Random sampling in multidimensional NMR spectroscopy Random sampling in multidimensional NMR spectroscopy Publication year: 2010 Source: Progress in Nuclear Magnetic Resonance Spectroscopy, In Press, Accepted Manuscript, Available online 3 August 2010</br> Krzysztof, Kazimierczuk , Jan, Stanek , Anna, Zawadzka-Kazimierczuk , Wiktor, Ko?mi?ski</br> More...	nmrlearner	Journal club	0	08-16-2010 03:50 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Trackbacks are Off Pingbacks are Off Refbacks are Off