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NMR processing:
MDD
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MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
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RPF scores
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Chemical shifts:
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Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
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PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Default Biomolecular NMR courses and workshops

Dear colleagues,

herewith I would like to announce a series of new courses and workshops that we are organizing in 2010, and which may be of interest to you or your associates.

Workshops: "NMR structure calculation - GRID applications and integrated tools"
A series of workshops that cover structure calculation methods and applications on the eNMR GRID, followed by demonstration and practice of the Extend-NMR integrated software pipeline. The workshop is organized and sponsored by the eNMR consortium with additional support from Extend-NMR. Please note that to participate in this workshop, an eNMR VO registration is required (http://www.enmr.eu/eNMR-registration). A refund of travel expenses of up to €250 is available for participants from non-profit organizations.

Courses: "From NMR Data to Protein Structure"
The course provides a thorough introduction to protein NMR assignment based on triple resonance NMR experiments. The emphasis in the course is on the basic and advanced techniques of NMR assignment using the latest version of CcpNmr Analysis. In addition, demonstrations of automated NOE assignment and structure calculation using CYANA, and structure refinement and visualization using YASARA will given. The course consists of a series of tailor made lectures, demonstrations and exercises that guide the participants through the complete procedure of assigning protein NMR spectra on a realistic data set.

Expected courses: "HADDOCK: Advanced course"
The advanced course in protein-protein, protein-DNA and protein ligand docking using HADDOCK is currently in development by Utrecht University. The course series is expected to start by mid 2010.

For further information on all available courses, details and application forms please visit our website training.spronknmr.eu or follow the links above.
Please feel free to contact us for any questions or suggestions that you may have.

Kind regards,

Chris Spronk

************************************************** ********

Dr. Chris Spronk
Director - UAB "Spronk NMR Consultancy"
Subaciaus gatve 15-4
LT-01126, Vilnius
Vilnius, Lithuania

chris@spronknmr.eu
www.spronknmr.eu

************************************************** ********
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