Oak Ridge, Berkeley research replication protein - UTDailyBeacon.com

		BioNMR > NMR community > Online News
Oak Ridge, Berkeley research replication protein - UTDailyBeacon.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-05-2013, 09:31 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,191

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Oak Ridge, Berkeley research replication protein - UTDailyBeacon.com

Oak Ridge, Berkeley research replication protein
UTDailyBeacon.com
"In order to get the whole picture, many different techniques are being used to study RPA, with important roles for x-ray crystallography, Nuclear Magnetic Resonance spectroscopy, small angle x-ray scattering and computer modeling. I brought the ...

Oak Ridge, Berkeley research replication protein - UTDailyBeacon.com
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Bruker and Lawrence Berkeley National Laboratory Collaborate on Novel ... - Business Wire (press release) http://nt1.ggpht.com/news/tbn/pbujffOLTN-5EM/6.jpg SunHerald.com <img alt="" height="1" width="1" /> Bruker and Lawrence Berkeley National Laboratory Collaborate on Novel ... Business Wire (press release) ... and Lawrence Berkeley National Laboratory (Berkeley Lab) today announced a collaboration to develop and distribute new structural biology methods and tools to integrate Small-Angle X-ray Scattering (SAXS) with Nuclear Magnetic Resonance (NMR). ... Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ...Genetic Engineering News all 14 news articles »	nmrlearner	Online News	0	11-14-2011 09:06 PM
Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News http://nt1.ggpht.com/news/tbn/pbujffOLTN-5EM/6.jpg SunHerald.com <img alt="" height="1" width="1" /> Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... Genetic Engineering News Bruker and Lawrence Berkeley National Laboratory are collaborating to develop structural biology methods and tools that integrate small-angle x-ray scattering (SAXS) technology with nuclear magnetic resonance (NMR). The aim is to generate a set of data ... Bruker and Lawrence Berkeley National Laboratory Collaborate on Novel ...MarketWatch (press release) all 14 news articles »	nmrlearner	Online News	0	11-11-2011 08:26 AM
Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News http://nt1.ggpht.com/news/tbn/pbujffOLTN-5EM/6.jpg SunHerald.com <img alt="" height="1" width="1" /> Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... Genetic Engineering News The aim is to generate a set of data analysis algorithms for determining the structures of larger, multi-domain proteins and protein complexes with DNA, RNA or other proteins. The organizations claim that combining the NMR-derived 3-dimensional atomic ... Bruker and Lawrence...	nmrlearner	Online News	0	11-10-2011 08:09 PM
[NMR tweet] Nuclear Magnetic Resonance With No Magnets @National Berkeley Lab http://t.co/SrWOO7Z Nuclear Magnetic Resonance With No Magnets @National Berkeley Lab http://t.co/SrWOO7Z Published by ykrocky (Rocky Iwakiri) on 2011-05-25T23:49:36Z Source: Twitter	nmrlearner	Twitter NMR	0	05-26-2011 12:40 AM
[NMR tweet] Nuclear Magnetic Resonance With No Magnets « Berkeley Lab News Center http://t.co/Eg7etqB Nuclear Magnetic Resonance With No Magnets « Berkeley Lab News Center http://t.co/Eg7etqB Published by robertslinn (Robert Slinn) on 2011-05-21T13:44:38Z Source: Twitter	nmrlearner	Twitter NMR	0	05-21-2011 01:50 PM
[NMR paper] Interaction of the replication terminator protein of Bacillus subtilis with DNA probed by NMR spectroscopy. Interaction of the replication terminator protein of Bacillus subtilis with DNA probed by NMR spectroscopy. Related Articles Interaction of the replication terminator protein of Bacillus subtilis with DNA probed by NMR spectroscopy. Biochem Biophys Res Commun. 2005 Sep 23;335(2):361-6 Authors: Hastings AF, Otting G, Folmer RH, Duggin IG, Wake RG, Wilce MC, Wilce JA Termination of DNA replication in Bacillus subtilis involves the polar arrest of replication forks by a specific complex formed between the dimeric 29 kDa replication terminator...	nmrlearner	Journal club	0	12-01-2010 06:56 PM
[NMR paper] Symmetry and secondary structure of the replication terminator protein of Bacillus su Symmetry and secondary structure of the replication terminator protein of Bacillus subtilis: sedimentation equilibrium and circular dichroic, infrared, and NMR spectroscopic studies. Related Articles Symmetry and secondary structure of the replication terminator protein of Bacillus subtilis: sedimentation equilibrium and circular dichroic, infrared, and NMR spectroscopic studies. Biochemistry. 1993 Sep 28;32(38):10216-23 Authors: Kralicek AV, Vesper NA, Ralston GB, Wake RG, King GF We have used analytical ultracentrifugation in combination...	nmrlearner	Journal club	0	08-22-2010 03:01 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off