Molecular details of protein reveal glimpse into how kidney stones form - Phys.Org

		BioNMR > NMR community > Online News
Molecular details of protein reveal glimpse into how kidney stones form - Phys.Org

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

01-07-2019, 05:49 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,188

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Molecular details of protein reveal glimpse into how kidney stones form - Phys.Org

Molecular details of protein reveal glimpse into how kidney stones form - Phys.Org

Molecular details of protein reveal glimpse into how kidney stones form Phys.OrgKidney stones—solid, pebble-like grit that forms when too much of certain minerals like calcium are in the urine—can strike men, women, and increasingly, ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Details of protein evolution investigated - Phys.Org Details of protein evolution investigated - Phys.Org Details of protein evolution investigated Phys.OrgProteins govern the biology of the cell. Through random mutation the sequences of our proteins slowly change over time, usually without affecting function. Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
[NMR paper] Epitope mapping of histo blood group antigens bound to norovirus VLPs using STD NMR experiments reveals fine details of molecular recognition. Epitope mapping of histo blood group antigens bound to norovirus VLPs using STD NMR experiments reveals fine details of molecular recognition. Epitope mapping of histo blood group antigens bound to norovirus VLPs using STD NMR experiments reveals fine details of molecular recognition. Glycoconj J. 2017 Aug 19;: Authors: Fiege B, Leuthold M, Parra F, Dalton KP, Meloncelli PJ, Lowary TL, Peters T Abstract Attachment of human noroviruses to histo blood group antigens (HBGAs) is thought to be critical for the infection process....	nmrlearner	Journal club	0	08-22-2017 10:10 AM
Molecular Simulations Reveal an Unresolved Conformationof the Type IA Protein Kinase A Regulatory Subunit and Suggest ItsRole in the cAMP Regulatory Mechanism Molecular Simulations Reveal an Unresolved Conformationof the Type IA Protein Kinase A Regulatory Subunit and Suggest ItsRole in the cAMP Regulatory Mechanism http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00461/20170717/images/medium/bi-2017-00461q_0003.gif Biochemistry DOI: 10.1021/acs.biochem.7b00461 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/pu40kY-RYM0 More...	nmrlearner	Journal club	0	07-18-2017 07:52 AM
Light microscopy provides a deep look into protein structure - Phys.org - Phys.Org Light microscopy provides a deep look into protein structure - Phys.org - Phys.Org http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcQG69FMdjaOzVdvO8fNDx9c1t6uv0SeGKAywKjRdVRRma0SZH4sGlq9-_q3JW8xkTHitn6biYqD Phys.Org <img alt="" height="1" width="1"> Light microscopy provides a deep look into protein structure - Phys.org Phys.Org Light microscopy continues to reveal the microscopic world at an ever increasing resolution. Using a new method coined COLD, scientists at the Max Planck ... and more »	nmrlearner	Online News	0	01-25-2017 11:13 PM
Enhanced-sensitivity NMR could reveal new clues to how proteins fold - Phys.Org Enhanced-sensitivity NMR could reveal new clues to how proteins fold - Phys.Org http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcRv5kcqepdG7qJM0UMWGlFFd6B7LANvsM9YhElwPbgnXWRAEWGTHs3JS_oQLgMHS8kZCRwpmbo Phys.Org <img alt="" height="1" width="1"> Enhanced-sensitivity NMR could reveal new clues to how proteins fold Phys.Org Until now, it has been difficult to fully characterize the different structures that proteins can take on in their natural environments. However, using a new technique known as sensitivity-enhanced nuclear magnetic resonance (NMR), MIT researchers have ... ...	nmrlearner	Online News	0	10-09-2015 04:49 PM
[NMR paper] Mapping Molecular Perturbations by a New Form of Two-Dimensional Spectroscopy. From Mendeley Biomolecular NMR group: Mapping Molecular Perturbations by a New Form of Two-Dimensional Spectroscopy. Journal of the American Chemical Society (2012). Eriks Kupce, Ray Freeman et al. We propose a new general form of two-dimensional spectroscopy where the indirect 'evolution' dimension is derived using the Radon transform. This idea is applicable to several types of spectroscopy but is illustrated here for the case of NMR. This 'projection spectroscopy' displays characteristic correlation peaks that highlight perturbations of chemical shifts caused by temperature,...	nmrlearner	Journal club	0	10-17-2013 12:49 PM
[NMR paper] Mapping Molecular Perturbations by a New Form of Two-Dimensional Spectroscopy. From Mendeley Biomolecular NMR group: Mapping Molecular Perturbations by a New Form of Two-Dimensional Spectroscopy. Journal of the American Chemical Society (2012). Eriks Kupce, Ray Freeman et al. We propose a new general form of two-dimensional spectroscopy where the indirect 'evolution' dimension is derived using the Radon transform. This idea is applicable to several types of spectroscopy but is illustrated here for the case of NMR. This 'projection spectroscopy' displays characteristic correlation peaks that highlight perturbations of chemical shifts caused by temperature,...	nmrlearner	Journal club	0	01-10-2013 04:46 PM
[NMR paper] Mapping Molecular Perturbations by a New Form of Two-Dimensional Spectroscopy. From Mendeley Biomolecular NMR group: Mapping Molecular Perturbations by a New Form of Two-Dimensional Spectroscopy. Journal of the American Chemical Society (2012). Eriks Kupce, Ray Freeman et al. We propose a new general form of two-dimensional spectroscopy where the indirect 'evolution' dimension is derived using the Radon transform. This idea is applicable to several types of spectroscopy but is illustrated here for the case of NMR. This 'projection spectroscopy' displays characteristic correlation peaks that highlight perturbations of chemical shifts caused by temperature,...	nmrlearner	Journal club	0	12-12-2012 01:44 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off