NMR Sparky Yahoo group homodimer, cyana

		BioNMR > NMR community > News from other NMR forums
[NMR Sparky Yahoo group] homodimer, cyana

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

10-22-2012, 09:07 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,188

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

homodimer, cyana

homodimer, cyana

Nature methods (2011). Volume: 8, Issue: 11. Pages: 919-31. Jameson R Bothe, Evgenia N Nikolova, Catherine D Eichhorn, Jeetender Chugh, Alexandar L Hansen, Hashim M Al-Hashimi et al.

Many recently discovered noncoding RNAs do not fold into a single native conformation but sample many different conformations along their free-energy landscape to carry out their biological function. Here we review solution-state NMR techniques that measure the structural, kinetic and thermodynamic characteristics of RNA motions spanning picosecond to second timescales at atomic resolution, allowing unprecedented insights into the RNA dynamic structure landscape. From these studies a basic description of the RNA dynamic structure landscape is emerging, bringing new insights into how RNA structures change to carry out their function as well as applications in RNA-targeted drug discovery and RNA bioengineering.

Published using Mendeley: Academic software for researchers

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR Sparky Yahoo group] Re: cyana Re: cyana Replace all M with Q using any text editor. That should take care of this except if you have pseudo atom names for carbon like CQD etc. In that event change More...	nmrlearner	News from other NMR forums	0	10-15-2012 10:49 PM
[NMR Sparky Yahoo group] Re: cyana Re: cyana Hi, Cyana will not accept Q in carbon atom names. You need to explicitly call it CD1 and CD2 etc. (Please see the link sent by Eiso). Please also see what I More...	nmrlearner	News from other NMR forums	0	10-15-2012 10:49 PM
[NMR Sparky Yahoo group] Re: cyana Re: cyana http://www.cyana.org/wiki/index.php/Standard_CYANA_nomenclature More...	nmrlearner	News from other NMR forums	0	10-13-2012 06:34 PM
3D-TROSY-based backbone and ILV-methyl resonance assignments of a 319-residue homodimer from a single protein sample 3D-TROSY-based backbone and ILV-methyl resonance assignments of a 319-residue homodimer from a single protein sample Abstract The feasibility of practically complete backbone and ILV methyl chemical shift assignments from a single -labeled protein sample of the truncated form of ligand-free Bst-Tyrosyl tRNA Synthetase (Bst-Î?YRS), a 319-residue predominantly helical homodimer, is established. Protonation of ILV residues at methyl positions does not appreciably detract from the quality of TROSY triple resonance data. The assignments are performed at 40 Â°C to improve the sensitivity of...	nmrlearner	Journal club	0	09-10-2012 01:48 AM
[Question from NMRWiki Q&A forum] How to extract inter distance restraints of homodimer protein from known crystal structure ? How to extract inter distance restraints of homodimer protein from known crystal structure ? Hello friends , my target protein exist as dimer and tetrameter , I would like to calculate the solution structure of dimer . i want extract inter distance restraints between two monomers of homo-dimer protein by using known crystal structure( pdb ). Unfortunately my c13 and n15 filter noesy experiment is failed . How to extract distance restraints from pdb of Homodimer . Regards Srinivas	nmrlearner	News from other NMR forums	0	04-13-2012 08:21 PM
[Question from NMRWiki Q&A forum] c13 filter noesy experment for homodimer protein c13 filter noesy experment for homodimer protein Dear wikiers I would like to take c13 filter noesy experment for homodimer protein , total 20 kd size . could you please suggest which parameters should i consider more specificly while taking this experment to get best signal because i dont want to try on trial and error method. any knid of help is greatly appreciated Thanking you in advance Regards sri	nmrlearner	News from other NMR forums	0	06-30-2011 05:06 PM
Combining NMR and EPR Methods for Homodimer Protein Structure Determination. Combining NMR and EPR Methods for Homodimer Protein Structure Determination. Related Articles Combining NMR and EPR Methods for Homodimer Protein Structure Determination. J Am Chem Soc. 2010 Aug 10; Authors: Yang Y, Ramelot TA, McCarrick RM, Ni S, Feldmann EA, Cort JR, Wang H, Ciccosanti C, Jiang M, Janjua H, Acton TB, Xiao R, Everett JK, Montelione GT, Kennedy MA There is a general need to develop more powerful and more robust methods for structural characterization of homodimers, homo-oligomers, and multiprotein complexes using...	nmrlearner	Journal club	0	08-17-2010 03:36 AM
Combining NMR and EPR Methods for Homodimer Protein Structure Determination http://pubs.acs.org//appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja105080h/aop/images/medium/ja-2010-05080h_0003.gif Combining NMR and EPR Methods for Homodimer Protein Structure Determination There is a general need to develop more powerful and more robust methods for structural characterization of homodimers, homo-oligomers, and multiprotein complexes using solution-state NMR methods. In recent years, there has been increasing emphasis on integrating distinct and complementary methodologies for structure determination of multiprotein ...	nmrlearner	Journal club	0	08-14-2010 05:56 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off