Question from NMRWiki Q&A forum Tool to extract several NMR spectra into text file format?

		BioNMR > NMR community > News from other NMR forums
[Question from NMRWiki Q&A forum] Tool to extract several NMR spectra into text file format?

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-20-2014, 01:45 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,191

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Tool to extract several NMR spectra into text file format?

Tool to extract several NMR spectra into text file format?

Hi As a newbie in the NMR world I hope you guys can help me out with a simple Q: I have 104 1D spectra I would like to transform into ascii_spec.txt via the commands: convbin2asc and txt:x;pdata,1 Do I have to do this 104 times or can this be done in one hit by?? Cheers Michael

Check if somebody has answered this question on NMRWiki QA forum

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] VirtualSpectrum, a tool for simulating peak list for multi-dimensional NMR spectra. VirtualSpectrum, a tool for simulating peak list for multi-dimensional NMR spectra. Related Articles VirtualSpectrum, a tool for simulating peak list for multi-dimensional NMR spectra. J Biomol NMR. 2014 Aug 14; Authors: Nielsen JT, Nielsen NC Abstract NMR spectroscopy is a widely used technique for characterizing the structure and dynamics of macromolecules. Often large amounts of NMR data are required to characterize the structure of proteins. To save valuable time and resources on data acquisition, simulated data is useful in...	nmrlearner	Journal club	0	08-15-2014 12:53 PM
VirtualSpectrum, a tool for simulating peak list for multi-dimensional NMR spectra VirtualSpectrum, a tool for simulating peak list for multi-dimensional NMR spectra Abstract NMR spectroscopy is a widely used technique for characterizing the structure and dynamics of macromolecules. Often large amounts of NMR data are required to characterize the structure of proteins. To save valuable time and resources on data acquisition, simulated data is useful in the developmental phase, for data analysis, and for comparison with experimental data. However, existing tools for this purpose can be difficult to use, are sometimes specialized for...	nmrlearner	Journal club	0	08-13-2014 07:50 PM
[CNS Yahoo group] Trajectory file format Trajectory file format I'm trying to write out a trajectory file that I can then visualise with pymol, vmd etc. I have no problem writing something, but the vmd dcdplugin won't read More...	nmrlearner	News from other NMR forums	0	09-29-2012 11:56 AM
[NMRpipe Yahoo group] Cannot execute the spript to convert varian format to nmrpipe format Cannot execute the spript to convert varian format to nmrpipe format Dear nmrpipe group, I have a group of data with Varian format (fid) and want to convert them to NMRPipe format (test.fid) I was able to read all data in varian More...	NMRpipe Yahoo group news	News from other NMR forums	0	09-29-2011 07:36 PM
[NMRwiki tweet] nmrwiki: How to extract spectra from an arrayed #nmr experiment in NutsPro?http://qa.nmrwiki.org/question/237/ nmrwiki: How to extract spectra from an arrayed #nmr experiment in NutsPro?http://qa.nmrwiki.org/question/237/ nmrwiki: How to extract spectra from an arrayed #nmr experiment in NutsPro?http://qa.nmrwiki.org/question/237/ Source: NMRWiki tweets	nmrlearner	Twitter NMR	0	03-04-2011 02:12 AM
[Question from NMRWiki Q&A forum] NutsPro software to extract a plot from a stacked plot file NutsPro software to extract a plot from a stacked plot file Hello, I was using VnmrJ to collect an array of 6 NMR spectra. I used VnmrJ to save all 6 spectra in 1 fid file by using the svf('filename') command. When opening the fid file in NutsPro to analyze the data, I am able to see all 6 spectra in Stacked Plots mode. They show up as Fid spectra, stacked on top of each other. However I am only able to individually display the first plot and only able to take the Fourier Transform of that first plot in the series. I am unable to select any other plot in that array. Is there a way in...	nmrlearner	News from other NMR forums	0	03-04-2011 02:12 AM
[Question from NMRWiki Q&A forum] How to extract Bruker fid data - in topspin and xwinnmr - to ascii format? How to extract Bruker fid data - in topspin and xwinnmr - to ascii format? Hi and thanks for answering my prev. questions! Decided to ask this one: How can I convert fid data (ser file) to plain text openable in programmes like Origin? Would really like to know how to do this in Topspin and XWinNMR. Thank you!!!	nmrlearner	News from other NMR forums	0	08-22-2010 02:30 AM
Double quantum filtering homonuclear MAS NMR correlation spectra: a tool for membrane protein studies Double quantum filtering homonuclear MAS NMR correlation spectra: a tool for membrane protein studies Jakob J. Lopez, Christoph Kaiser, Sarika Shastri and Clemens Glaubitz Journal of Biomolecular NMR; 2008; 41(2) pp 97 - 104 Abstract: 13C homonuclear correlation spectra based on proton driven spin diffusion (PDSD) are becoming increasingly important for obtaining distance constraints from multiply labeled biomolecules by MAS NMR. One particular challenging situation arises when such constraints are to be obtained from spectra with a large natural abundance signal background which...	linawaed	Journal club	0	08-04-2008 04:01 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off