BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 08-21-2010, 10:48 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,644
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default NMR studies in experimental allergic encephalomyelitis: factors which contribute to T

NMR studies in experimental allergic encephalomyelitis: factors which contribute to T1 and T2 values.

Related Articles NMR studies in experimental allergic encephalomyelitis: factors which contribute to T1 and T2 values.

Magn Reson Med. 1990 Apr;14(1):1-11

Authors: Karlik SJ, Gilbert JJ, Wong C, Vandervoort MK, Noseworthy JH

To determine the factors which may alter NMR relaxation times in multiple sclerosis (MS) lesions we measured the proton T1 and T2, specific gravity (SG), and histology in the central nervous system (CNS; 13-19 levels per animal) in the myelin basic protein (MBP) and CNS-induced acute and relapsing EAE models in 44 juvenile Hartley guinea pigs. In the MBP model, T1 is unchanged but T2 is prolonged before symptoms and pathological changes occur. T2 remains prolonged during the acute phase of MBP-induced EAE. In the acute CNS model, T1 and T2 were not different from control despite advanced pathological changes of inflammation and demyelination and changes in specific gravity, indicating a marked change in tissue water content. No single variable, pathological or SG, could predict T1 or T2 values in the CNS-induced model. In active disease in the MBP model, when edema occurs in the presence or absence of parenchymal infiltration, T2 values are increased. However, as the factors which influence tissue NMR characteristics are complex in these MS models, it is likely difficult to infer specific pathological events from MRI findings in patients with MS.

PMID: 1693744 [PubMed - indexed for MEDLINE]



Source: PubMed
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
News relating to impact factors
News relating to impact factors News relating to impact factors Content Type Journal Article Category Editorial Pages 1-1 DOI 10.1007/s10858-011-9557-6
nmrlearner Journal club 0 09-30-2011 08:01 PM
Sequence correction of random coil chemical shifts: correlation between neighbor correction factors and changes in the Ramachandran distribution
Sequence correction of random coil chemical shifts: correlation between neighbor correction factors and changes in the Ramachandran distribution Abstract Random coil chemical shifts are necessary for secondary chemical shift analysis, which is the main NMR method for identification of secondary structure in proteins. One of the largest challenges in the determination of random coil chemical shifts is accounting for the effect of neighboring residues. The contributions from the neighboring residues are typically removed by using neighbor correction factors determined based on each...
nmrlearner Journal club 0 06-06-2011 12:53 AM
[NMR tweet] Berkeley Lab scientists contribute to remarkable advance in nuclear magnetic resonance http://bit.ly/lFBMPl
Berkeley Lab scientists contribute to remarkable advance in nuclear magnetic resonance http://bit.ly/lFBMPl Published by Alltop_health (Alltop Health) on 2011-05-19T06:50:46Z Source: Twitter
nmrlearner Twitter NMR 0 05-19-2011 07:30 AM
[NMR tweet] Berkeley Lab scientists contribute to remarkable advance in nuclear magnetic resonance http://health.gresnews.com/ch/TopStories/id/299828
Berkeley Lab scientists contribute to remarkable advance in nuclear magnetic resonance http://health.gresnews.com/ch/TopStories/id/299828 Published by gresnewshealth (Gresnews Health) on 2011-05-19T06:19:18Z Source: Twitter
nmrlearner Twitter NMR 0 05-19-2011 06:23 AM
[NMR tweet] Berkeley Lab scientists contribute to remarkable advance in nuclear magnetic resonance: Nuclear magnetic resonan... http://bit.ly/kd4hF5
Berkeley Lab scientists contribute to remarkable advance in nuclear magnetic resonance: Nuclear magnetic resonan... http://bit.ly/kd4hF5 Published by NewsMedical (News-Medical.Net) on 2011-05-19T05:38:09Z Source: Twitter
nmrlearner Twitter NMR 0 05-19-2011 06:23 AM
[NMR tweet] Medical News : Berkeley Lab scientists contribute to remarkable advance in nuclear magnetic resonance: Nuclear m... http://bit.ly/lFBMPl
Medical News : Berkeley Lab scientists contribute to remarkable advance in nuclear magnetic resonance: Nuclear m... http://bit.ly/lFBMPl Published by Balimore (Andrizy Schwartz) on 2011-05-19T05:27:30Z Source: Twitter
nmrlearner Twitter NMR 0 05-19-2011 06:23 AM
[NMR paper] Detergent-resistant membrane fractions contribute to the total 1H NMR-visible lipid s
Detergent-resistant membrane fractions contribute to the total 1H NMR-visible lipid signal in cells. Related Articles Detergent-resistant membrane fractions contribute to the total 1H NMR-visible lipid signal in cells. Eur J Biochem. 2003 May;270(9):2091-100 Authors: Wright LC, Djordjevic JT, Schibeci SD, Himmelreich U, Muljadi N, Williamson P, Lynch GW Leukocytes and other cells show an enhanced intensity of mobile lipid in their 1H NMR spectra under a variety of conditions. Such conditions include stimulation, which has recently been shown...
nmrlearner Journal club 0 11-24-2010 09:01 PM
[NMR paper] Factors determining the reliable description of global tumbling parameters in solutio
Factors determining the reliable description of global tumbling parameters in solution NMR. Related Articles Factors determining the reliable description of global tumbling parameters in solution NMR. J Biomol NMR. 2002 Nov;24(3):215-29 Authors: Pawley NH, Gans JD, Nicholson LK An accurate description of global tumbling of a protein is essential for correct analysis and interpretation of internal dynamics and thermodynamics. The accurate fitting of global tumbling parameters is affected by the number of experimental relaxation data points...
nmrlearner Journal club 0 11-24-2010 08:58 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 05:52 PM.


Map