Membranes Do Not Tell Proteins How To Fold

		BioNMR > Educational resources > Journal club
Membranes Do Not Tell Proteins How To Fold

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

12-28-2015, 12:26 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,178

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Membranes Do Not Tell Proteins How To Fold

Membranes Do Not Tell Proteins How To Fold

Biochemistry
DOI: 10.1021/acs.biochem.5b01134

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Enhanced-sensitivity NMR could reveal new clues to how proteins fold - Phys.Org Enhanced-sensitivity NMR could reveal new clues to how proteins fold - Phys.Org http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcRv5kcqepdG7qJM0UMWGlFFd6B7LANvsM9YhElwPbgnXWRAEWGTHs3JS_oQLgMHS8kZCRwpmbo Phys.Org <img alt="" height="1" width="1"> Enhanced-sensitivity NMR could reveal new clues to how proteins fold Phys.Org Until now, it has been difficult to fully characterize the different structures that proteins can take on in their natural environments. However, using a new technique known as sensitivity-enhanced nuclear magnetic resonance (NMR), MIT researchers have ... ...	nmrlearner	Online News	0	10-09-2015 04:49 PM
Characterization of Mapcho Bicelles - Model Membranes for the NMR Study of Membrane Proteins and Peptides Characterization of Mapcho Bicelles - Model Membranes for the NMR Study of Membrane Proteins and Peptides Publication date: 28 January 2014 Source:Biophysical Journal, Volume 106, Issue 2, Supplement 1</br> Author(s): Maïwenn Beaugrand , Alexandre A. Arnold , Philip T.F. Williamson , Isabelle Marcotte</br> </br></br> </br></br> More...	nmrlearner	Journal club	0	01-29-2014 12:50 AM
A trick to fold proteins more quickly: 'Clever' technique speeds up the ... - Science Daily (press release) <img alt="" height="1" width="1" /> A trick to fold proteins more quickly: 'Clever' technique speeds up the ... Science Daily (press release) "We exploit the experimental data obtained observing the proteins through nuclear magnetic resonance, and use them to create restraints to be applied to the model," explained Laio, who has coordinated the research published in Proceedings of the ... and more » A trick to fold proteins more quickly: 'Clever' technique speeds up the ... - Science Daily (press release) More...	nmrlearner	Online News	0	05-08-2013 02:49 PM
A trick to fold proteins more quickly - PhysOrg.com - Phys.Org <img alt="" height="1" width="1" /> A trick to fold proteins more quickly - PhysOrg.com Phys.Org "We exploit the experimental data obtained observing the proteins through nuclear magnetic resonance, and use them to create restraints to be applied to the model", explained Laio, who has coordinated the research published in Proceedings of the ... A trick to fold proteins more quickly - PhysOrg.com - Phys.Org More...	nmrlearner	Online News	0	05-08-2013 02:49 PM
Fold it: Solid-state NMR unravels proteins - spectroscopyNOW.com Fold it: Solid-state NMR unravels proteins - spectroscopyNOW.com <img alt="" height="1" width="1" /> Fold it: Solid-state NMR unravels proteins spectroscopyNOW.com Researchers have developed a novel solid-state NMR spectroscopic method that uses paramagnetic tags to help them visualize the shape of protein molecules. The technique could be used to help scientists understand the properties of various biological ... Read here	nmrlearner	Online News	0	04-01-2012 03:58 PM
Fold it: Solid-state NMR unravels proteins Fold it: Solid-state NMR unravels proteins Researchers have developed a novel solid-state NMR spectroscopic method that uses paramagnetic tags to help them visualize the shape of protein molecules. The technique could be used to help scientists understand the properties of various biological molecules under normal, healthy conditions and also in those that are involved in a range of diseases. Source: Spectroscopynow.com	nmrlearner	General	0	04-01-2012 03:58 PM
Rapid measurement of residual dipolar couplings for fast fold elucidation of proteins Rapid measurement of residual dipolar couplings for fast fold elucidation of proteins Abstract It has been demonstrated that protein folds can be determined using appropriate computational protocols with NMR chemical shifts as the sole source of experimental restraints. While such approaches are very promising they still suffer from low convergence resulting in long computation times to achieve accurate results. Here we present a suite of time- and sensitivity optimized NMR experiments for rapid measurement of up to six RDCs per residue. Including such an RDC data set, measured in less...	nmrlearner	Journal club	0	09-17-2011 10:20 AM
[NMR paper] An approach to global fold determination using limited NMR data from larger proteins An approach to global fold determination using limited NMR data from larger proteins selectively protonated at specific residue types. An approach to global fold determination using limited NMR data from larger proteins selectively protonated at specific residue types. J Biomol NMR. 1996 Oct;8(3):360-8 Authors: Smith BO, Ito Y, Raine A, Teichmann S, Ben-Tovim L, Nietlispach D, Broadhurst RW, Terada T, Kelly M, Oschkinat H, Shibata T, Yokoyama S, Laue ED A combination of calculation and experiment is used to demonstrate that the global fold of...	nmrlearner	Journal club	0	08-22-2010 02:20 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off