BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 11-06-2014, 08:45 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,197
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Cell-compatible, integrin-targeted cryptophane-(129)Xe NMR biosensors.

Cell-compatible, integrin-targeted cryptophane-(129)Xe NMR biosensors.

Related Articles Cell-compatible, integrin-targeted cryptophane-(129)Xe NMR biosensors.

Chem Sci. 2011 Jun;2(6):1103-1110

Authors: Seward GK, Bai Y, Khan NS, Dmochowski IJ

Abstract
Peptide-modified cryptophane enables sensitive detection of protein analytes using hyperpolarized (129)Xe NMR spectroscopy. Here we report improved targeting and delivery of cryptophane to cells expressing ?v?3 integrin receptor, which is overexpressed in many human cancers. Cryptophane was functionalized with cyclic RGDyK peptide and Alexa Fluor 488 dye, and cellular internalization was monitored by confocal laser scanning microscopy. Competitive blocking assays confirmed cryptophane endocytosis through an ?v?3 integrin receptor-mediated pathway. The peptide-cryptophane conjugate was determined to be nontoxic in normal human lung fibroblasts by MTT assay at the micromolar cryptophane concentrations typically used for hyperpolarized (129)Xe NMR biosensing experiments. Flow cytometry revealed 4-fold higher cellular internalization in cancer cells overexpressing the integrin receptor compared to normal cells. Nanomolar inhibitory concentrations (IC 50 = 20-30 nM) were measured for cryptophane biosensors against vitronectin binding to ?v?3 integrin and fibrinogen binding to ?IIb?3 integrin. Functionalization of the conjugate with two propionic acid groups improved water solubility for hyperpolarized (129)Xe NMR spectroscopic studies, which revealed a single resonance at 67 ppm for the (129)Xe-cryptophane-cyclic RGDyK biosensor. Introduction of ?IIb?3 integrin receptor in detergent solution generated a new "bound" (129)Xe biosensor peak that was shifted 4 ppm downfield from the "free" (129)Xe biosensor.


PMID: 25364495 [PubMed - as supplied by publisher]



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] NMR evidence for oligosaccharide release from the dendritic-cell specific intercellular adhesion molecule*3-grabbing non-integrin-related (CLEC4M) carbohydrate recognition domain at low pH.
NMR evidence for oligosaccharide release from the dendritic-cell specific intercellular adhesion molecule*3-grabbing non-integrin-related (CLEC4M) carbohydrate recognition domain at low pH. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-2250-98-WileyOnlineLibrary-Button_120x27px_FullText.gif Related Articles NMR evidence for oligosaccharide release from the dendritic-cell specific intercellular adhesion molecule*3-grabbing non-integrin-related (CLEC4M) carbohydrate recognition domain at low pH. FEBS J. 2014...
nmrlearner Journal club 0 10-15-2014 10:58 AM
$40 Million Funding Available for Shared Instrumentation Grant Program - Targeted News Service (subscription)
<img alt="" height="1" width="1" /> $40 Million Funding Available for Shared Instrumentation Grant Program Targeted News Service (subscription) ... of supported instrumentation include, but are not limited to, nuclear magnetic resonance systems, electron and confocal microscopes, mass spectrometers, protein and DNA sequencers, biosensors, x-ray diffractometers, cell sorters and NMR spectrometers. and more &raquo; $40 Million Funding Available for Shared Instrumentation Grant Program - Targeted News Service (subscription) More...
nmrlearner Online News 0 02-25-2014 12:44 AM
[NMR paper] 1H NMR Based Targeted Metabolite Profiling for Understanding the Complex Relationship Connecting Oxidative Stress with Endometriosis.
1H NMR Based Targeted Metabolite Profiling for Understanding the Complex Relationship Connecting Oxidative Stress with Endometriosis. 1H NMR Based Targeted Metabolite Profiling for Understanding the Complex Relationship Connecting Oxidative Stress with Endometriosis. Biomed Res Int. 2013;2013:329058 Authors: Jana SK, Dutta M, Joshi M, Srivastava S, Chakravarty B, Chaudhury K Abstract Accumulating evidence indicates the active role of oxidative stress in the development of endometriosis; however, the mechanism of reactive oxygen species...
nmrlearner Journal club 0 08-29-2013 01:53 PM
[NMR paper] NMR Structure of Integrin ?4 Cytosolic Tail and Its Interactions with Paxillin.
NMR Structure of Integrin ?4 Cytosolic Tail and Its Interactions with Paxillin. Related Articles NMR Structure of Integrin ?4 Cytosolic Tail and Its Interactions with Paxillin. PLoS One. 2013;8(1):e55184 Authors: Chua GL, Patra AT, Tan SM, Bhattacharjya S Abstract BACKGROUND: Integrins are a group of transmembrane signaling proteins that are important in biological processes such as cell adhesion, proliferation and migration. Integrins are ?/? hetero-dimers and there are 24 different integrins formed by specific combinations of 18 ? and 8...
nmrlearner Journal club 0 02-06-2013 10:18 PM
Nuclear-Targeted DrugDelivery of TAT Peptide-ConjugatedMonodisperse Mesoporous Silica Nanoparticles
Nuclear-Targeted DrugDelivery of TAT Peptide-ConjugatedMonodisperse Mesoporous Silica Nanoparticles Limin Pan, Qianjun He, Jianan Liu, Yu Chen, Ming Ma, Linlin Zhang and Jianlin Shi http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja211035w/aop/images/medium/ja-2011-11035w_0004.gif Journal of the American Chemical Society DOI: 10.1021/ja211035w http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/A2E3nMr_NZA
nmrlearner Journal club 0 03-21-2012 11:38 AM
[NMR paper] Chemical proteomic tool for ligand mapping of CYP antitargets: an NMR-compatible 3D Q
Chemical proteomic tool for ligand mapping of CYP antitargets: an NMR-compatible 3D QSAR descriptor in the Heme-Based Coordinate System. Related Articles Chemical proteomic tool for ligand mapping of CYP antitargets: an NMR-compatible 3D QSAR descriptor in the Heme-Based Coordinate System. J Chem Inf Comput Sci. 2004 Jul-Aug;44(4):1456-65 Authors: Yao H, Costache AD, Sem DS Chemical proteomic strategies strive to probe and understand protein-ligand interactions across gene families. One gene family of particular interest in drug and xenobiotic...
nmrlearner Journal club 0 11-24-2010 09:51 PM
[NMR paper] Protein stabilization by compatible solutes. Effect of diglycerol phosphate on the dy
Protein stabilization by compatible solutes. Effect of diglycerol phosphate on the dynamics of Desulfovibrio gigas rubredoxin studied by NMR. Related Articles Protein stabilization by compatible solutes. Effect of diglycerol phosphate on the dynamics of Desulfovibrio gigas rubredoxin studied by NMR. Eur J Biochem. 2003 Dec;270(23):4606-14 Authors: Lamosa P, Turner DL, Ventura R, Maycock C, Santos H Heteronuclear NMR relaxation measurements and hydrogen exchange data have been used to characterize protein dynamics in the presence or absence of...
nmrlearner Journal club 0 11-24-2010 09:16 PM
[NMR paper] NMR analysis of structure and dynamics of the cytosolic tails of integrin alpha IIb b
NMR analysis of structure and dynamics of the cytosolic tails of integrin alpha IIb beta 3 in aqueous solution. Related Articles NMR analysis of structure and dynamics of the cytosolic tails of integrin alpha IIb beta 3 in aqueous solution. Biochemistry. 2001 Jun 26;40(25):7498-508 Authors: Ulmer TS, Yaspan B, Ginsberg MH, Campbell ID The structural and dynamic properties of the cytosolic tails of the adhesion receptor integrin alphaIIbbeta3, fused to a coiled-coil construct via (Gly)(3) linkers, were studied in aqueous solution by nuclear...
nmrlearner Journal club 0 11-19-2010 08:32 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 02:20 PM.


Map