BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 08-21-2010, 11:53 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,654
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default 31P-NMR of liver peroxisome membranes from normal and clofibrate-treated rats.

31P-NMR of liver peroxisome membranes from normal and clofibrate-treated rats.

Related Articles 31P-NMR of liver peroxisome membranes from normal and clofibrate-treated rats.

Cell Mol Biol (Noisy-le-grand). 1993 Jul;39(5):479-89

Authors: Serafini B, Cimini A, Sette M, Sartori C

Normal and clofibrate-induced rat liver peroxisomes were studied in order to correlate the drug-elicited modifications of membrane permeability and fluidity with changes of the phospholipid component. The phospholipid composition and membrane fluidity of purified peroxisomal fractions from control and test animals were evaluated by 31P-NMR and fluorescence polarization spectroscopic techniques. The ultrastructural, enzymatic and electrophoretic analyses confirmed that the drug was able to induce: i) peroxisome proliferation; ii) increase of the catalase and fatty acyl CoA beta-oxidation system (FAOS) activities, and iii) neosynthesis of the 69 kDa peroxisomal membrane protein (PMP). The distribution pattern of the peroxisomal enzymes and the fluorescence polarization values of anilinonaphthalene-8-sulfonate (ANS)-labelled peroxisomes, suggests that the membrane permeability and fluidity are altered, while 31P-NMR spectroscopy seems to indicate that the phospholipid composition and the phospholipid/lysophospholipid ratio do not vary between test and control samples.

PMID: 8397028 [PubMed - indexed for MEDLINE]



Source: PubMed
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR tweet] Back to the world of nuclear magnetic resonance! (i.e. my normal job lol)
Back to the world of nuclear magnetic resonance! (i.e. my normal job lol) Published by publick_otter (Dodge Otter) on 2011-04-11T13:11:33Z Source: Twitter
nmrlearner Twitter NMR 0 04-11-2011 01:42 PM
A Selective NMR Method for Detecting Choline Containing Compounds in Liver Tissue: Th
A Selective NMR Method for Detecting Choline Containing Compounds in Liver Tissue: The 1H-14N HSQC Experiment Jiezhen Mao, Ling Jiang, Bin Jiang, Maili Liu and Xi-an Mao http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja107745g/aop/images/medium/ja-2010-07745g_0003.gif Journal of the American Chemical Society DOI: 10.1021/ja107745g http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/3IJa7rhbOjw
nmrlearner Journal club 0 11-20-2010 06:29 AM
[NMR paper] Galactose metabolism in normal human lymphoblasts studied by (1)H, (13)C and (31)P NM
Galactose metabolism in normal human lymphoblasts studied by (1)H, (13)C and (31)P NMR spectroscopy of extracts. Related Articles Galactose metabolism in normal human lymphoblasts studied by (1)H, (13)C and (31)P NMR spectroscopy of extracts. NMR Biomed. 2001 May;14(3):192-8 Authors: Wehrli SL, Reynolds R, Chen J, Yager C, Segal S The development of tools to follow and quantitate the fate of galactose in mammalian cells is crucial to the study and understanding of the inherited disorders of galactose metabolism. In this study we incubated...
nmrlearner Journal club 0 11-19-2010 08:32 PM
[NMR paper] The NMR solution structure of the non-classical homeodomain from the rat liver LFB1/H
The NMR solution structure of the non-classical homeodomain from the rat liver LFB1/HNF1 transcription factor. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles The NMR solution structure of the non-classical homeodomain from the rat liver LFB1/HNF1 transcription factor. J Mol Biol. 1997 Apr 4;267(3):673-83 Authors: Schott O, Billeter M, Leiting B, Wider G, Wüthrich K The nuclear magnetic resonance (NMR) solution structure of the non-classical homeodomain from the rat...
nmrlearner Journal club 0 08-22-2010 03:31 PM
[NMR paper] The NMR solution structure of the non-classical homeodomain from the rat liver LFB1/H
The NMR solution structure of the non-classical homeodomain from the rat liver LFB1/HNF1 transcription factor. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles The NMR solution structure of the non-classical homeodomain from the rat liver LFB1/HNF1 transcription factor. J Mol Biol. 1997 Apr 4;267(3):673-83 Authors: Schott O, Billeter M, Leiting B, Wider G, Wüthrich K The nuclear magnetic resonance (NMR) solution structure of the non-classical homeodomain from the rat...
nmrlearner Journal club 0 08-22-2010 03:03 PM
[NMR paper] NMR relaxation data of water proton in normal tissues.
NMR relaxation data of water proton in normal tissues. Related Articles NMR relaxation data of water proton in normal tissues. Physiol Chem Phys Med NMR. 1996;28(4):205-38 Authors: Akber SF The spin lattice relaxation time (T1) and spin spin relaxation time (T2) of water protons of normal human and animal tissues are archived to up-date those already published. The mechanisms for water proton relaxation times of tissues are reviewed with reference to water content, paramagnetic ion, protein dynamics content and organ weight.
nmrlearner Journal club 0 08-22-2010 02:27 PM
[NMR paper] Biophysical investigations on L1210 mouse leukemia cells treated with activated cyclo
Biophysical investigations on L1210 mouse leukemia cells treated with activated cyclophosphamide metabolites: determination of selective properties of DNA-interstrand and DNA-protein cross-linking mechanisms (alkaline elution and 31P-NMR-spectroscopy) and some aspects of the combination drug and radiotherapy. Related Articles Biophysical investigations on L1210 mouse leukemia cells treated with activated cyclophosphamide metabolites: determination of selective properties of DNA-interstrand and DNA-protein cross-linking mechanisms (alkaline elution and 31P-NMR-spectroscopy) and...
nmrlearner Journal club 0 08-21-2010 10:48 PM
[NMR paper] The roles of Glu-327 and His-446 in the bisphosphatase reaction of rat liver 6-phosph
The roles of Glu-327 and His-446 in the bisphosphatase reaction of rat liver 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase probed by NMR spectroscopic and mutational analyses of the enzyme in the transient phosphohistidine intermediate complex. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles The roles of Glu-327 and His-446 in the bisphosphatase reaction of rat liver 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase probed by NMR spectroscopic and mutational analyses of the enzyme in the transient phosphohistidine...
nmrlearner Journal club 0 08-21-2010 04:03 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 06:31 PM.


Map