[ASAP] Enzymatic Synthesis of 3?–5?, 3?–5? Cyclic Dinucleotides, Their Binding Properties to the Stimulator of Interferon Genes Adaptor Protein, and Structure/Activity Correlations

		BioNMR > Educational resources > Journal club
[ASAP] Enzymatic Synthesis of 3?–5?, 3?–5? Cyclic Dinucleotides, Their Binding Properties to the Stimulator of Interferon Genes Adaptor Protein, and Structure/Activity Correlations

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-19-2021, 03:34 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,188

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

[ASAP] Enzymatic Synthesis of 3?–5?, 3?–5? Cyclic Dinucleotides, Their Binding Properties to the Stimulator of Interferon Genes Adaptor Protein, and Structure/Activity Correlations

[ASAP] Enzymatic Synthesis of 3?–5?, 3?–5? Cyclic Dinucleotides, Their Binding Properties to the Stimulator of Interferon Genes Adaptor Protein, and Structure/Activity Correlations

Biochemistry
DOI: 10.1021/acs.biochem.1c00692

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Protein Dynamics Influence the Enzymatic Activity of Phospholipase A/Acyltransferases 3 and 4 Protein Dynamics Influence the Enzymatic Activity of Phospholipase A/Acyltransferases 3 and 4 https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00974/20210322/images/medium/bi0c00974_0008.gif Biochemistry DOI: 10.1021/acs.biochem.0c00974 http://feeds.feedburner.com/~r/acs/bichaw/~4/ZVh6ic9SaHM More...	nmrlearner	Journal club	0	03-22-2021 09:15 PM
[ASAP] Optimizing the First TPR Domain of the Human SPAG1 Protein Provides Insight into the HSP70 and HSP90 Binding Properties Optimizing the First TPR Domain of the Human SPAG1 Protein Provides Insight into the HSP70 and HSP90 Binding Properties https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.1c00052/20210319/images/medium/bi1c00052_0008.gif Biochemistry DOI: 10.1021/acs.biochem.1c00052 http://feeds.feedburner.com/~r/acs/bichaw/~4/erk3hPL4q-U More...	nmrlearner	Journal club	0	03-20-2021 02:31 AM
[ASAP] Recapitulating the Binding Affinity of Nrf2 for KEAP1 in a Cyclic Heptapeptide, Guided by NMR, X-ray Crystallography, and Machine Learning Recapitulating the Binding Affinity of Nrf2 for KEAP1 in a Cyclic Heptapeptide, Guided by NMR, X-ray Crystallography, and Machine Learning Paula C. Ortet, Samantha N. Muellers, Lauren A. Viarengo-Baker, Kristina Streu, Blair R. Szymczyna, Aaron B. Beeler, Karen N. Allen, and Adrian Whitty Journal of the American Chemical Society DOI: 10.1021/jacs.0c09799 http://feeds.feedburner.com/~r/acs/jacsat/~4/ufYT-73DNeA Source: Journal of the American Chemical Society	nmrlearner	Journal club	0	03-09-2021 02:17 PM
[NMR paper] Ligand Strain and Its Conformational Complexity Is a Major Factor Determining Binding of Cyclic Dinucleotides to STING Protein Ligand Strain and Its Conformational Complexity Is a Major Factor Determining Binding of Cyclic Dinucleotides to STING Protein Angewandte Chemie International Edition, Accepted Article. More...	nmrlearner	Journal club	0	02-26-2021 02:02 PM
[ASAP] Protein Sequence Selection Method That Enables Full Consensus Design of Artificial l-Threonine 3-Dehydrogenases with Unique Enzymatic Properties Protein Sequence Selection Method That Enables Full Consensus Design of Artificial l-Threonine 3-Dehydrogenases with Unique Enzymatic Properties https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00570/20200925/images/medium/bi0c00570_0005.gif Biochemistry DOI: 10.1021/acs.biochem.0c00570 http://feeds.feedburner.com/~r/acs/bichaw/~4/fsYaXqh1J1g More...	nmrlearner	Journal club	0	09-28-2020 09:16 PM
[ASAP] Unraveling the RNA Binding Properties of the Iron–Sulfur Zinc Finger Protein CPSF30 Unraveling the RNA Binding Properties of the Iron–Sulfur Zinc Finger Protein CPSF30 https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.9b01065/20200219/images/medium/bi9b01065_0011.gif Biochemistry DOI: 10.1021/acs.biochem.9b01065 http://feeds.feedburner.com/~r/acs/bichaw/~4/gciyur7Eemg More...	nmrlearner	Journal club	0	02-29-2020 09:52 PM
[ASAP] Evaluation of Maltose Binding Protein-Tagged hATR Kinase Domain Catalytic Activity with p53 Ser-15 Phosphorylation Evaluation of Maltose Binding Protein-Tagged hATR Kinase Domain Catalytic Activity with p53 Ser-15 Phosphorylation https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.8b00845/20181112/images/medium/bi-2018-00845m_0010.gif Biochemistry DOI: 10.1021/acs.biochem.8b00845 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/Tq4UYmY00_M More...	nmrlearner	Journal club	0	11-25-2018 06:02 AM
[NMR thesis] Synthesis, NMR Solution Structure, and Neuritogenic Activity of Chondroitin Sulfate D and E Synthesis, NMR Solution Structure, and Neuritogenic Activity of Chondroitin Sulfate D and E Yang, Kuang-Wei (2018) Synthesis, NMR Solution Structure, and Neuritogenic Activity of Chondroitin Sulfate D and E. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/TPD7-FB87. http://resolver.caltech.edu/CaltechTHESIS:05292018-232454800 More...	nmrlearner	NMR theses	0	05-31-2018 04:47 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off