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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Showing results 1 to 6 of 6
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Go to first new post Heavy metal binding domain in a cysteine-rich protein may be sea snail adaptation to metal stress - Phys.Org
Heavy metal binding domain in a cysteine-rich protein may be sea snail adaptation to metal stress - Phys.Org <img alt="" height="1" width="1"> Heavy metal binding domain in a cysteine-rich protein may be sea snail adaptation to metal stress Phys.Org Structural Adaptation of a Protein to Increased Metal Stress: NMR Structure of a Marine Snail Metallothionein with an Additional Domain. Credit: Wiley. A special type of small sulfur-rich protein, metallothioneins, have an extraordinary capability for ... Read here
nmrlearner
Today 10:00 AM
by nmrlearner Go to last post
0 3 Online News
Go to first new post Replication Protein A Blocks the Way
Replication Protein A Blocks the Way http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00221/20170323/images/medium/bi-2017-00221y_0001.gif Biochemistry DOI: 10.1021/acs.biochem.7b00221 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/yVnWE43laMc More...
nmrlearner
Today 10:00 AM
by nmrlearner Go to last post
0 4 Journal club
Go to first new post HybridNMR: A Union of Solution- and Solid-State NMR
HybridNMR: A Union of Solution- and Solid-State NMR Pallavi Thiagarajan-Rosenkranz, Adrian W. Draney and Justin L. Lorieau http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.6b11402/20170323/images/medium/ja-2016-11402a_0005.gif Journal of the American Chemical Society DOI: 10.1021/jacs.6b11402 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/mD2EmAjG2mo
nmrlearner
Today 10:00 AM
by nmrlearner Go to last post
0 5 Journal club
Go to first new post Protein Crystallization Market to Observe Strong Development by 2020 - Medgadget (blog)
Protein Crystallization Market to Observe Strong Development by 2020 - Medgadget (blog) http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcT8odg9QMVMgeM_9WXyrMAR0ZnrBA5OsA2xy1L7maIXL5n-4TCmk4AUNwZNUWJiY4SnN-qwtF4 Medgadget (blog) <img alt="" height="1" width="1"> Protein Crystallization Market to Observe Strong Development by 2020 Medgadget (blog) Various techniques used during protein crystallization technology are ion-exchange chromatography, high-performance liquid chromatography (HPLC), gel-electrophoresis, x-ray crystallography and nuclear magnetic resonance (NMR). On the...
nmrlearner
Yesterday 08:51 PM
by nmrlearner Go to last post
0 7 Online News
Go to first new post [NMR paper] Probing Medin Monomer Structure and its Amyloid Nucleation Using (13)C-Direct Detection NMR in Combination with Structural Bioinformatics.
Probing Medin Monomer Structure and its Amyloid Nucleation Using (13)C-Direct Detection NMR in Combination with Structural Bioinformatics. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.nature.com-images-lo_npg.gif Related Articles Probing Medin Monomer Structure and its Amyloid Nucleation Using (13)C-Direct Detection NMR in Combination with Structural Bioinformatics. Sci Rep. 2017 Mar 22;7:45224 Authors: Davies HA, Rigden DJ, Phelan MM, Madine J Abstract Aortic medial amyloid is the most prevalent...
nmrlearner
Yesterday 08:51 PM
by nmrlearner Go to last post
0 10 Journal club
Go to first new post [NMR paper] Cu(II)-Based Paramagnetic Probe to Study RNA-Protein Interactions by NMR.
Cu(II)-Based Paramagnetic Probe to Study RNA-Protein Interactions by NMR. Related Articles Cu(II)-Based Paramagnetic Probe to Study RNA-Protein Interactions by NMR. Inorg Chem. 2017 Mar 22; Authors: Seebald LM, DeMott CM, Ranganathan S, Asare Okai PN, Glazunova A, Chen A, Shekhtman A, Royzen M Abstract Paramagnetic NMR techniques allow for studying three-dimensional structures of RNA-protein complexes. In particular, paramagnetic relaxation enhancement (PRE) data can provide valuable information about long-range distances between...
nmrlearner
Yesterday 08:51 PM
by nmrlearner Go to last post
0 10 Journal club
Showing results 1 to 6 of 6

 
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