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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR
Showing results 1 to 6 of 6
Search took 0.00 seconds. Search: Posts From Last Day
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Go to first new post Solution-state methyl NMR spectroscopy of large non-deuterated proteins enabled by deep neural networks - Nature.com
Solution-state methyl NMR spectroscopy of large non-deuterated proteins enabled by deep neural networks - Nature.com Solution-state methyl NMR spectroscopy of large non-deuterated proteins enabled by deep neural networks Nature.com Read here
nmrlearner
Today 04:21 PM
by nmrlearner Go to last post
0 4 Online News
Go to first new post The Use of NMR to Study Transient Carbohydrate—Protein Interactions - Frontiers
The Use of NMR to Study Transient Carbohydrate—Protein Interactions - Frontiers The Use of NMR to Study Transient Carbohydrate—Protein Interactions Frontiers Read here
nmrlearner
Today 04:20 AM
by nmrlearner Go to last post
0 3 Online News
Go to first new post Automated Fragmentation QM/MM Calculation of NMR Chemical Shifts for Protein-Ligand Complexes - Frontiers
Automated Fragmentation QM/MM Calculation of NMR Chemical Shifts for Protein-Ligand Complexes - Frontiers Automated Fragmentation QM/MM Calculation of NMR Chemical Shifts for Protein-Ligand Complexes Frontiers Read here
nmrlearner
Today 04:20 AM
by nmrlearner Go to last post
0 3 Online News
Go to first new post Combining Cell-Free Protein Synthesis and NMR Into a Tool to Study Capsid Assembly Modulation - Frontiers
Combining Cell-Free Protein Synthesis and NMR Into a Tool to Study Capsid Assembly Modulation - Frontiers Combining Cell-Free Protein Synthesis and NMR Into a Tool to Study Capsid Assembly Modulation Frontiers Read here
nmrlearner
Today 04:20 AM
by nmrlearner Go to last post
0 3 Online News
Go to first new post Crowding Effects on the Structure and Dynamics of the Intrinsically Disordered Nuclear Chromatin Protein NUPR1 - Frontiers
Crowding Effects on the Structure and Dynamics of the Intrinsically Disordered Nuclear Chromatin Protein NUPR1 - Frontiers Crowding Effects on the Structure and Dynamics of the Intrinsically Disordered Nuclear Chromatin Protein NUPR1 Frontiers Read here
nmrlearner
Today 04:20 AM
by nmrlearner Go to last post
0 3 Online News
Go to first new post [NMR paper] Quantitative Characterization of Chain-Flipping of Acyl Carrier Protein of Escherichia coli Using Chemical Exchange NMR
Quantitative Characterization of Chain-Flipping of Acyl Carrier Protein of Escherichia coli Using Chemical Exchange NMR The acyl carrier protein of Escherichia coli, termed AcpP, is a prototypical example of type II fatty acid synthase systems found in many bacteria. It serves as a central hub by accepting diverse acyl moieties (4-18 carbons) and shuttling them between its multiple enzymatic partners to generate fatty acids. Prior structures of acyl-AcpPs established that thioester-linked acyl cargos are sequestered within AcpP's hydrophobic lumen. In contrast, structures of enzyme-bound...
nmrlearner
Today 04:20 AM
by nmrlearner Go to last post
0 44 Journal club
Showing results 1 to 6 of 6

 
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