NMR paper Stereodivergent Protein Engineering of Fatty Acid Photodecarboxylase for Light-Driven Kinetic Resolution of Sec-Alcohol Oxalates

		BioNMR > Educational resources > Journal club
[NMR paper] Stereodivergent Protein Engineering of Fatty Acid Photodecarboxylase for Light-Driven Kinetic Resolution of Sec-Alcohol Oxalates

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-26-2024, 08:50 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,224

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Stereodivergent Protein Engineering of Fatty Acid Photodecarboxylase for Light-Driven Kinetic Resolution of Sec-Alcohol Oxalates

Stereodivergent Protein Engineering of Fatty Acid Photodecarboxylase for Light-Driven Kinetic Resolution of Sec-Alcohol Oxalates

Angewandte Chemie International Edition, Volume 63, Issue 10, March 4, 2024.

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] NMR and Docking Calculations Reveal Novel Atomistic Selectivity of a Synthetic High-Affinity Free Fatty Acid vs. Free Fatty Acids in Sudlow's Drug Binding Sites in Human Serum Albumin NMR and Docking Calculations Reveal Novel Atomistic Selectivity of a Synthetic High-Affinity Free Fatty Acid vs. Free Fatty Acids in Sudlow's Drug Binding Sites in Human Serum Albumin Saturation transfer difference (STD), inter-ligand NOEs (INPHARMA NMR), and docking calculations are reported for investigating specific binding sites of the high-affinity synthetic 7-nitrobenz-2-oxa-1,3-diazoyl-4-C(12) fatty acid (NBD-C(12) FA) with non-labeled human serum albumin (HSA) and in competition with the drugs warfarin and ibuprofen. A limited number of negative interligand NOEs between NBD-C(12)...	nmrlearner	Journal club	0	12-27-2023 08:40 AM
Light-driven post-translational installation of reactive protein side chains - Nature.com Light-driven post-translational installation of reactive protein side chains - Nature.com Light-driven post-translational installation of reactive protein side chains Nature.com Read here	nmrlearner	Online News	0	09-24-2020 07:17 PM
Branched Fatty Acid Esters of Hydroxy Fatty AcidsAre Preferred Substrates of the MODY8 Protein Carboxyl Ester Lipase Branched Fatty Acid Esters of Hydroxy Fatty AcidsAre Preferred Substrates of the MODY8 Protein Carboxyl Ester Lipase http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00565/20160810/images/medium/bi-2016-005654_0006.gif Biochemistry DOI: 10.1021/acs.biochem.6b00565 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/5hcTbvGS4MY More...	nmrlearner	Journal club	0	08-11-2016 06:27 AM
[NMR paper] NMR assignment and structural characterization of the fatty acid binding protein from NMR assignment and structural characterization of the fatty acid binding protein from the flight muscle of Locusta migratoria. Related Articles NMR assignment and structural characterization of the fatty acid binding protein from the flight muscle of Locusta migratoria. J Biomol NMR. 2003 Apr;25(4):355-6 Authors: Lücke C, Kizilbash N, van Moerkerk HT, Veerkamp JH, Hamilton JA	nmrlearner	Journal club	0	11-24-2010 09:01 PM
[NMR paper] Interaction of chicken liver basic fatty acid-binding protein with fatty acids: a 13C Interaction of chicken liver basic fatty acid-binding protein with fatty acids: a 13C NMR and fluorescence study. Related Articles Interaction of chicken liver basic fatty acid-binding protein with fatty acids: a 13C NMR and fluorescence study. Biochemistry. 2001 Oct 23;40(42):12604-11 Authors: Beringhelli T, Goldoni L, Capaldi S, Bossi A, Perduca M, Monaco HL Two different groups of liver fatty acid-binding proteins (L-FABPs) are known: the mammalian type and the basic type. Very few members of this second group of L-FABPs have been...	nmrlearner	Journal club	0	11-19-2010 08:44 PM
[NMR paper] Holo-sterol carrier protein-2. (13)C NMR investigation of cholesterol and fatty acid Holo-sterol carrier protein-2. (13)C NMR investigation of cholesterol and fatty acid binding sites. Related Articles Holo-sterol carrier protein-2. (13)C NMR investigation of cholesterol and fatty acid binding sites. J Biol Chem. 1999 Dec 10;274(50):35425-33 Authors: Stolowich N, Frolov A, Petrescu AD, Scott AI, Billheimer JT, Schroeder F Although sterol carrier protein-2 (SCP-2) stimulates sterol transfer in vitro, almost nothing is known regarding the identity of the putative cholesterol binding site. Furthermore, the interrelationship(s)...	nmrlearner	Journal club	0	11-18-2010 08:31 PM
[NMR paper] The NMR solution structure of intestinal fatty acid-binding protein complexed with pa The NMR solution structure of intestinal fatty acid-binding protein complexed with palmitate: application of a novel distance geometry algorithm. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles The NMR solution structure of intestinal fatty acid-binding protein complexed with palmitate: application of a novel distance geometry algorithm. J Mol Biol. 1996 Dec 6;264(3):585-602 Authors: Hodsdon ME, Ponder JW, Cistola DP The three-dimensional solution structure of rat...	nmrlearner	Journal club	0	08-22-2010 02:20 PM
[NMR paper] 13C NMR studies of fatty acid-protein interactions: comparison of homologous fatty ac 13C NMR studies of fatty acid-protein interactions: comparison of homologous fatty acid-binding proteins produced in the intestinal epithelium. Related Articles 13C NMR studies of fatty acid-protein interactions: comparison of homologous fatty acid-binding proteins produced in the intestinal epithelium. Mol Cell Biochem. 1990 Oct 15-Nov 8;98(1-2):101-10 Authors: Cistola DP, Sacchettini JC, Gordon JI A high-resolution, solution-state NMR method for characterizing and comparing the interactions between carboxyl 13C-enriched fatty acids (FA) and...	nmrlearner	Journal club	0	08-21-2010 11:04 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off