Related ArticlesNMR Constraints Analyser: a web-server for the graphical analysis of NMR experimental constraints.
Nucleic Acids Res. 2010 Jul 1;38 Suppl:W628-32
Authors: Heller DM, Giorgetti A
Nuclear magnetic resonance (NMR) spectroscopy together with X-ray crystallography, are the main techniques used for the determination of high-resolution 3D structures of biological molecules. The output of an NMR experiment includes a set of lower and upper limits for the distances (constraints) between pairs of atoms. If the number of constraints is high enough, there will be a finite number of possible conformations (models) of the macromolecule satisfying the data. Thus, the more constraints are measured, the better defined these structures will be. The availability of a user-friendly tool able to help in the analysis and interpretation of the number of experimental constraints per residue, is thus of valuable importance when assessing the levels of structure definition of NMR solved biological macromolecules, in particular, when high-quality structures are needed in techniques such as, computational biology approaches, site-directed mutagenesis experiments and/or drug design. Here, we present a free publicly available web-server, i.e. NMR Constraints Analyser, which is aimed at providing an automatic graphical analysis of the NMR experimental constraints atom by atom. The NMR Constraints Analyser server is available from the web-page http://molsim.sci.univr.it/constraint.
[NMR Sparky Yahoo group] Re: distance constraints from NOESY crosspeaks
Re: distance constraints from NOESY crosspeaks
Did you do the build up with different mixing time?Jay From: jennig148 To: nmr_sparky@yahoogroups.com Sent: Friday, February 10,
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nmrlearner
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02-10-2012 09:28 PM
[NMR Sparky Yahoo group] distance constraints from NOESY crosspeaks
distance constraints from NOESY crosspeaks
Hello users, I have a NOESY spectrum of a DNA/RNA strand. I try to get the distance constraints by integration of the NOESY crosspeaks and then converting the
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nmrlearner
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02-10-2012 09:28 PM
[KPWU blog] [web server] protein structural analysis
protein structural analysis
PDBsum provides service that users can upload their calculated structures for analysis including ramachandran plot, sequence+secondary structural element, etc. The figure below is an example. For self-generated structures, users need to click the link “generate” to upload your PDB files. To know the structural information of published biomolecules at Protein Data Bank, just type the http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=570&subd=kpwu&ref=&feed=1
Go to KPWU blog to read complete post.
nmrlearner
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10-12-2011 06:37 AM
[NMR paper] BioMagResBank database with sets of experimental NMR constraints corresponding to the
BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank.
Related Articles BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank.
J Biomol NMR. 2003 Jun;26(2):139-46
Authors: Doreleijers JF, Mading S, Maziuk D, Sojourner K, Yin L, Zhu J, Markley JL, Ulrich EL
Experimental constraints associated with NMR structures are available from the...
nmrlearner
Journal club
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11-24-2010 09:01 PM
[CNS Yahoo group] CNS Graphical Interface?
CNS Graphical Interface?
In the enormous amounts of information written on CNS I have found various mentions of a graphical interface. I am very new to the program and am just trying
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nmrlearner
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10-22-2010 07:36 PM
[NMR paper] Protein structural analysis from solid-state NMR-derived orientational constraints.
Protein structural analysis from solid-state NMR-derived orientational constraints.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-cellhub.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Protein structural analysis from solid-state NMR-derived orientational constraints.
Biophys J. 1997 May;72(5):2342-8
Authors: Quine JR, Brenneman MT, Cross TA
High-resolution orientational constraints from solid-state NMR...
nmrlearner
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08-22-2010 03:31 PM
[NMR paper] Protein structural analysis from solid-state NMR-derived orientational constraints.
Protein structural analysis from solid-state NMR-derived orientational constraints.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-cellhub.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Protein structural analysis from solid-state NMR-derived orientational constraints.
Biophys J. 1997 May;72(5):2342-8
Authors: Quine JR, Brenneman MT, Cross TA
High-resolution orientational constraints from solid-state NMR...
NMR Constraints Analyser: a web-server for the graphical analysis of NMR experimental
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