BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Bionmr.com issues > A test forum
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 05-07-2005, 07:08 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,135
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default

Editor's Corner
Assessing precision and accuracy of protein structures derived from NMR data
David A. Snyder 1 2, Aneerban Bhattacharya 1 2, Yuanpeng J. Huang 1 2, Gaetano T. Montelione 1 2 *
1Center for Advanced Biotechnology and Medicine, Department of Molecular Biology and Biochemistry, and Northeast Structural Genomics Consortium, Rutgers University, Piscataway, NJ 08854
2Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Piscataway, NJ 08854


*Correspondence to Gaetano T. Montelione, CABM-Rutgers University, 679 Hoes Lane, Piscataway, NJ 08854

Funded by:


http://www3.interscience.wiley.com/cgi-bin...445479/ABSTRACT
Reply With Quote

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Assessing precision and accuracy of protein structures derived from NMR data.
Assessing precision and accuracy of protein structures derived from NMR data. Related Articles Assessing precision and accuracy of protein structures derived from NMR data. Proteins. 2005 Jun 1;59(4):655-61 Authors: Snyder DA, Bhattacharya A, Huang YJ, Montelione GT
nmrlearner Journal club 0 11-25-2010 08:21 PM
[NMR paper] High precision NMR structure of YhhP, a novel Escherichia coli protein implicated in
High precision NMR structure of YhhP, a novel Escherichia coli protein implicated in cell division. Related Articles High precision NMR structure of YhhP, a novel Escherichia coli protein implicated in cell division. J Mol Biol. 2000 Nov 24;304(2):219-29 Authors: Katoh E, Hatta T, Shindo H, Ishii Y, Yamada H, Mizuno T, Yamazaki T YhhP, a small protein of 81 amino acid residues encoded by the yhhP gene in the Escherichia coli database, is implicated in cell division although the precise biological function of this protein has not been yet...
nmrlearner Journal club 0 11-19-2010 08:29 PM
[NMR paper] The button test: a small scale method using microdialysis cells for assessing protein
The button test: a small scale method using microdialysis cells for assessing protein solubility at concentrations suitable for NMR. Related Articles The button test: a small scale method using microdialysis cells for assessing protein solubility at concentrations suitable for NMR. J Biomol NMR. 1997 Oct;10(3):279-82 Authors: Bagby S, Tong KI, Liu D, Alattia JR, Ikura M A simple method has been developed for screening solution conditions to determine conditions under which a protein is soluble at the high concentrations typically used for NMR...
nmrlearner Journal club 0 08-22-2010 05:08 PM
[NMR paper] Accuracy and precision of NMR relaxation experiments and MD simulations for character
Accuracy and precision of NMR relaxation experiments and MD simulations for characterizing protein dynamics. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_120x27.gif Related Articles Accuracy and precision of NMR relaxation experiments and MD simulations for characterizing protein dynamics. Proteins. 1997 Aug;28(4):481-93 Authors: Philippopoulos M, Mandel AM, Palmer AG, Lim C Model-free parameters obtained from nuclear magnetic resonance (NMR) relaxation...
nmrlearner Journal club 0 08-22-2010 05:08 PM
[NMR paper] An assessment of the precision and accuracy of protein structures determined by NMR.
An assessment of the precision and accuracy of protein structures determined by NMR. Dependence on distance errors. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles An assessment of the precision and accuracy of protein structures determined by NMR. Dependence on distance errors. J Mol Biol. 1994 Jun 24;239(5):601-7 Authors: Zhao D, Jardetzky O We tested the dependence of the accuracy and precision of calculated NMR structures on the errors of the distance constraints...
nmrlearner Journal club 0 08-22-2010 03:33 AM
[NMR paper] An assessment of the precision and accuracy of protein structures determined by NMR.
An assessment of the precision and accuracy of protein structures determined by NMR. Dependence on distance errors. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles An assessment of the precision and accuracy of protein structures determined by NMR. Dependence on distance errors. J Mol Biol. 1994 Jun 24;239(5):601-7 Authors: Zhao D, Jardetzky O We tested the dependence of the accuracy and precision of calculated NMR structures on the errors of the distance constraints...
nmrlearner Journal club 0 08-22-2010 03:33 AM
[NMR paper] Defining the precision with which a protein structure is determined by NMR. Applicati
Defining the precision with which a protein structure is determined by NMR. Application to motilin. Related Articles Defining the precision with which a protein structure is determined by NMR. Application to motilin. Biochemistry. 1993 Feb 16;32(6):1610-7 Authors: Shriver J, Edmondson S A simple procedure is introduced for accurately defining the precision with which the Cartesian coordinates of any macromolecular structure are determined by nuclear Overhauser data. The method utilizes an ensemble of structures obtained from an array of...
nmrlearner Journal club 0 08-21-2010 11:53 PM
Precision and Accuracy of NMR Structures - PSI
Precision and Accuracy of NMR Structures - a presentation by the Protein Structure Initiative - is available to read from here: http://journals.iucr.org/services/nmr/precision.pdf More information about the PSI can be found here: http://www.structuralgenomics.org/
Rachel Educational web pages 0 09-10-2008 05:32 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 09:09 PM.


Map