Finding protein function from its NMR
 

For proteomics folks who gamble with their careers by promising discovery of protein function from NMR structures that may not look like any known proteins.

• Find the best structural matches in a protein database
• DALI
• CE
• DEJAVU
  
  Align structure of your protein with several proteins of your interest
• MASS
• MaltiProt
• CEMC
• CATH
  
  Pairwise comparison of protein structures
• SuperPose
• FAST
• K2SA
• CE
• Protein3DFit
• SSAP

relevant links:
http://www.csb.yale.edu/poststructure/

Try ProFunc from Janet Thornton's group

"It uses both sequence- and structure-based methods to try to provide clues as the the protein's likely or possible function. Often, where one method fails to provide any functional insight another may be more helpful."


http://www.ebi.ac.uk/thornton-srv/databases/ProFunc/