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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Showing results 1 to 25 of 500
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Search: Posts Made By: nmrlearner
Forum: Journal club Today, 10:14 AM
Replies: 0
Views: 1
Posted By nmrlearner
Solution NMR Studies of Anesthetic Interactions with Ion Channels.

Solution NMR Studies of Anesthetic Interactions with Ion Channels. (https://www.ncbi.nlm.nih.gov/pubmed/29673534?dopt=Abstract)

Related Articles...
Forum: Journal club Today, 10:14 AM
Replies: 0
Views: 1
Posted By nmrlearner
Anti-cancer effects of emodin on HepG2 cells as revealed by 1H-NMR based metabolic profiling.

Anti-cancer effects of emodin on HepG2 cells as revealed by 1H-NMR based metabolic profiling. (https://www.ncbi.nlm.nih.gov/pubmed/29676152?dopt=Abstract)

Related Articles...
Forum: News from NMR blogs Yesterday, 02:17 PM
Replies: 0
Views: 9
Posted By nmrlearner
Primary Transfer Step in the Light-Driven Ion Pump Bacteriorhodopsin: An Irreversible U-Turn Revealed by Dynamic Nuclear Polarization-Enhanced Magic Angle Spinning NMR #DNPNMR

From The DNP-NMR Blog:

Primary Transfer Step in the Light-Driven Ion Pump Bacteriorhodopsin: An Irreversible U-Turn Revealed by Dynamic Nuclear Polarization-Enhanced Magic Angle Spinning NMR...
Forum: Journal club Yesterday, 01:59 AM
Replies: 0
Views: 22
Posted By nmrlearner
[ASAP] Optochemical Control of Protein Localization and Activity within Cell-like Compartments

[ASAP] Optochemical Control of Protein Localization and Activity within Cell-like Compartments (http://feedproxy.google.com/~r/acs/bichaw/~3/YTwrLh3Efvc/acs.biochem.8b00131)
...
Forum: Online News Yesterday, 01:59 AM
Replies: 0
Views: 18
Posted By nmrlearner
Pressure control helps NMR analyze protein as it folds - Chemical & Engineering News

Pressure control helps NMR analyze protein as it folds - Chemical & Engineering News
...
Forum: Journal club 04-19-2018, 01:52 PM
Replies: 0
Views: 17
Posted By nmrlearner
Structure and Dynamic Properties of a Ti-Binding Peptide Bound to TiO2 Nanoparticles As Accessed by (1)H NMR Spectroscopy.

Structure and Dynamic Properties of a Ti-Binding Peptide Bound to TiO2 Nanoparticles As Accessed by (1)H NMR Spectroscopy. (https://www.ncbi.nlm.nih.gov/pubmed/27138325?dopt=Abstract)
...
Forum: Journal club 04-19-2018, 01:52 PM
Replies: 0
Views: 16
Posted By nmrlearner
Effect of Saturated Very Long-Chain Fatty Acids on the Organization of Lipid Membranes: A Study Combining (2)H NMR Spectroscopy and Molecular Dynamics Simulations.

Effect of Saturated Very Long-Chain Fatty Acids on the Organization of Lipid Membranes: A Study Combining (2)H NMR Spectroscopy and Molecular Dynamics Simulations....
Forum: Journal club 04-19-2018, 01:52 PM
Replies: 0
Views: 16
Posted By nmrlearner
Parallel ?-Sheet Structure of Alanine Tetrapeptide in the Solid State As Studied by Solid-State NMR Spectroscopy.

Parallel ?-Sheet Structure of Alanine Tetrapeptide in the Solid State As Studied by Solid-State NMR Spectroscopy. (https://www.ncbi.nlm.nih.gov/pubmed/27482868?dopt=Abstract)
...
Forum: Journal club 04-19-2018, 01:52 PM
Replies: 0
Views: 16
Posted By nmrlearner
Structure and Dynamics of Extracellular Loops in Human Aquaporin-1 from Solid-State NMR and Molecular Dynamics.

Structure and Dynamics of Extracellular Loops in Human Aquaporin-1 from Solid-State NMR and Molecular Dynamics. (https://www.ncbi.nlm.nih.gov/pubmed/27583975?dopt=Abstract)
...
Forum: Journal club 04-19-2018, 01:52 PM
Replies: 0
Views: 18
Posted By nmrlearner
Study of protein folding under native conditions by rapidly switching the hydrostatic pressure inside an NMR sample cell.

Study of protein folding under native conditions by rapidly switching the hydrostatic pressure inside an NMR sample cell. (https://www.ncbi.nlm.nih.gov/pubmed/29666248?dopt=Abstract)

Related...
Forum: Journal club 04-19-2018, 01:52 PM
Replies: 0
Views: 16
Posted By nmrlearner
Solution NMR Structure and Backbone Dynamics of Recombinant Bee Venom Melittin.

Solution NMR Structure and Backbone Dynamics of Recombinant Bee Venom Melittin. (https://www.ncbi.nlm.nih.gov/pubmed/29668274?dopt=Abstract)

Related Articles...
Forum: Journal club 04-19-2018, 01:52 PM
Replies: 0
Views: 15
Posted By nmrlearner
Atomic structures of excited state A??T Hoogsteen base pairs in duplex DNA by combining NMR relaxation dispersion, mutagenesis, and chemical shift calculations

Atomic structures of excited state A??T Hoogsteen base pairs in duplex DNA by combining NMR relaxation dispersion, mutagenesis, and chemical shift calculations...
Forum: News from NMR blogs 04-19-2018, 01:51 AM
Replies: 0
Views: 16
Posted By nmrlearner
Direct hyperpolarization of micro- and nanodiamonds for bioimaging applications - Considerations on particle size, functionalization and polarization loss

From The DNP-NMR Blog:

Direct hyperpolarization of micro- and nanodiamonds for bioimaging applications - Considerations on particle size, functionalization and polarization loss...
Forum: Journal club 04-19-2018, 01:51 AM
Replies: 0
Views: 15
Posted By nmrlearner
[ASAP] Strategy for Stabilization of CutA1 Proteins Due to IonIon Interactions at Temperatures of over 100 C

[ASAP] Strategy for Stabilization of CutA1 Proteins Due to IonIon Interactions at Temperatures of over 100 C (http://feedproxy.google.com/~r/acs/bichaw/~3/RydMtktKULY/acs.biochem.8b00103)
...
Forum: News from NMR blogs 04-18-2018, 01:41 PM
Replies: 0
Views: 12
Posted By nmrlearner
Postdoc position at Utrecht University: solid-state NMR-based design of membrane-active peptide-antibiotics

From The DNP-NMR Blog:

Postdoc position at Utrecht University: solid-state NMR-based design of membrane-active peptide-antibiotics...
Forum: Journal club 04-18-2018, 01:41 PM
Replies: 0
Views: 18
Posted By nmrlearner
The recognition of glycans by protein receptors. Insights from NMR spectroscopy.

The recognition of glycans by protein receptors. Insights from NMR spectroscopy. (https://www.ncbi.nlm.nih.gov/pubmed/29662983?dopt=Abstract)

Related Articles...
Forum: Journal club 04-18-2018, 01:41 PM
Replies: 0
Views: 18
Posted By nmrlearner
Lysine Side-Chain Dynamics in the Binding Site of Homeodomain/DNA Complexes as Observed by NMR Relaxation Experiments and Molecular Dynamics Simulations.

Lysine Side-Chain Dynamics in the Binding Site of Homeodomain/DNA Complexes as Observed by NMR Relaxation Experiments and Molecular Dynamics Simulations....
Forum: Journal club 04-18-2018, 01:41 PM
Replies: 0
Views: 14
Posted By nmrlearner
Protein-Solvent Interfaces in Human Y145Stop Prion Protein Amyloid Fibrils Probed by Paramagnetic Solid-State NMR Spectroscopy

Protein-Solvent Interfaces in Human Y145Stop Prion Protein Amyloid Fibrils Probed by Paramagnetic Solid-State NMR Spectroscopy...
Forum: Journal club 04-18-2018, 01:27 AM
Replies: 0
Views: 19
Posted By nmrlearner
[ASAP] Properties of Site-Specifically Incorporated 3-Aminotyrosine in Proteins To Study Redox-Active Tyrosines: Escherichia coli Ribonucleotide Reductase as a Paradigm

[ASAP] Properties of Site-Specifically Incorporated 3-Aminotyrosine in Proteins To Study Redox-Active Tyrosines: Escherichia coli Ribonucleotide Reductase as a Paradigm...
Forum: Journal club 04-18-2018, 01:27 AM
Replies: 0
Views: 19
Posted By nmrlearner
Observation of acetyl phosphate formation in mammalian mitochondria using real-time in-organelle NMR metabolomics [Biochemistry]

Observation of acetyl phosphate formation in mammalian mitochondria using real-time in-organelle NMR metabolomics [Biochemistry] (http://www.pnas.org/content/115/16/4152.short?rss=1)

Wen Jun Xu,...
Forum: Journal club 04-17-2018, 11:55 AM
Replies: 0
Views: 25
Posted By nmrlearner
Dynamics and Rigidity of an Intact Filamentous Bacteriophage Virus Probed by Magic Angle Spinning NMR.

Dynamics and Rigidity of an Intact Filamentous Bacteriophage Virus Probed by Magic Angle Spinning NMR. (https://www.ncbi.nlm.nih.gov/pubmed/29660798?dopt=Abstract)

Related Articles...
Forum: Journal club 04-16-2018, 11:40 PM
Replies: 0
Views: 24
Posted By nmrlearner
An NMR strategy to detect conformational differences in a protein complexed with highly analogous inhibitors in solution.

An NMR strategy to detect conformational differences in a protein complexed with highly analogous inhibitors in solution. (https://www.ncbi.nlm.nih.gov/pubmed/29656080?dopt=Abstract)

Related...
Forum: Online News 04-16-2018, 11:40 PM
Replies: 0
Views: 24
Posted By nmrlearner
Physical chemistry renews hope in quest to cure Alzheimer - An-Nahar

http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcQUFx1tt490uMRPxiTFDQ1oaTsEOHRUG8zKK8QqPdpLZgq4-IqJzAcpJC8wn7kFuUBBGFuwmn4B
An-Nahar...
Forum: Journal club 04-16-2018, 11:30 AM
Replies: 0
Views: 26
Posted By nmrlearner
TROSY pulse sequence for simultaneous measurement of the 15 N R 1 and { 1 H}?? 15 N NOE in deuterated proteins

TROSY pulse sequence for simultaneous measurement of the 15 N R 1 and { 1 H}?? 15 N NOE in deuterated proteins (http://link.springer.com/10.1007/s10858-018-0181-6)

Abstract

...
Forum: Journal club 04-15-2018, 02:48 PM
Replies: 0
Views: 28
Posted By nmrlearner
Structure and dynamics of plant TatA in micelles and lipid bilayers studied by solution NMR.

Structure and dynamics of plant TatA in micelles and lipid bilayers studied by solution NMR. (https://www.ncbi.nlm.nih.gov/pubmed/29654717?dopt=Abstract)

Structure and dynamics of plant...
Showing results 1 to 25 of 500

 
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