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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Showing results 1 to 12 of 12
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Go to first new post [NMR paper] Editorial: New 1.2 GHz NMR Spectrometersó New Horizons?
Editorial: New 1.2 GHz NMR Spectrometersó New Horizons? The latest ultrahigh-field NMR spectrometers are a huge technological challenge that require large financial investments. In his Guest Editorial, Harald Schwalbe justifies the need for spectrometers with higher magnetic field strengths. The important results from previous generations of high-field NMR spectrometers are discussed, and research areas are identified that will benefit from the latest spectrometers. More...
nmrlearner
Today 01:01 PM
by nmrlearner Go to last post
0 3 Journal club
Go to first new post [NMR paper] (1)H, (13)C and (15)N chemical shift assignments of Saccharomyces cerevisiae type 1 thioredoxin in the oxidized state by solution NMR spectroscopy.
(1)H, (13)C and (15)N chemical shift assignments of Saccharomyces cerevisiae type 1 thioredoxin in the oxidized state by solution NMR spectroscopy. Related Articles (1)H, (13)C and (15)N chemical shift assignments of Saccharomyces cerevisiae type 1 thioredoxin in the oxidized state by solution NMR spectroscopy. Biomol NMR Assign. 2017 Aug 14;: Authors: Iqbal A, Almeida FCL Abstract Thioredoxins (Trx) are ubiquitous proteins that regulate several biochemical processes inside the cell. Trx is an important player, displaying...
nmrlearner
Today 01:01 PM
by nmrlearner Go to last post
0 2 Journal club
Go to first new post [NMR paper] NMR backbone resonance assignment of New Delhi metallo-beta-lactamase.
NMR backbone resonance assignment of New Delhi metallo-beta-lactamase. Related Articles NMR backbone resonance assignment of New Delhi metallo-beta-lactamase. Biomol NMR Assign. 2017 Aug 14;: Authors: Yao C, Wu Q, Xu G, Li C Abstract The emerging of the New Delhi metallo-beta-lactamase (NDM-1) has become one of the greatest threats to the clinical treatment. Although the structure of NDM-1 has been determined by X-ray crystallography, the molecular mechanism and process of catalysis reaction remain elusive. NMR spectroscopy plays...
nmrlearner
Today 01:01 PM
by nmrlearner Go to last post
0 2 Journal club
Go to first new post [NMR paper] NMR resonance assignments of a hypoallergenic isoform of the major birch pollen allergen Bet v 1.
NMR resonance assignments of a hypoallergenic isoform of the major birch pollen allergen Bet v 1. Related Articles NMR resonance assignments of a hypoallergenic isoform of the major birch pollen allergen Bet v 1. Biomol NMR Assign. 2017 Aug 14;: Authors: Ahammer L, Grutsch S, Wallner M, Ferreira F, Tollinger M Abstract In Northern America and Europe a great number of people are suffering from birch pollen allergy and pollen related food allergies. The trigger for these immunological reactions is the 17.5*kDa major birch pollen...
nmrlearner
Today 01:01 PM
by nmrlearner Go to last post
0 2 Journal club
Go to first new post [NMR paper] Application of Solution NMR to Structural Studies on ?-Helical Integral Membrane Proteins.
Application of Solution NMR to Structural Studies on ?-Helical Integral Membrane Proteins. Related Articles Application of Solution NMR to Structural Studies on ?-Helical Integral Membrane Proteins. Molecules. 2017 Aug 15;22(8): Authors: Sim DW, Lu Z, Won HS, Lee SN, Seo MD, Lee BJ, Kim JH Abstract A large portion of proteins in living organisms are membrane proteins which play critical roles in the biology of the cell, from maintenance of the biological membrane integrity to communication of cells with their surroundings. To...
nmrlearner
Today 01:01 PM
by nmrlearner Go to last post
0 2 Journal club
Go to first new post [NMR paper] A Unique and Simple Approach to Improve Sensitivity in (15)N-NMR Relaxation Measurements for NH?? Groups: Application to a Protein-DNA Complex.
A Unique and Simple Approach to Improve Sensitivity in (15)N-NMR Relaxation Measurements for NH?? Groups: Application to a Protein-DNA Complex. Related Articles A Unique and Simple Approach to Improve Sensitivity in (15)N-NMR Relaxation Measurements for NH?? Groups: Application to a Protein-DNA Complex. Molecules. 2017 Aug 15;22(8): Authors: Nguyen D, Lokesh GLR, Volk DE, Iwahara J Abstract NMR spectroscopy is a powerful tool for research on protein dynamics. In the past decade, there has been significant progress in the...
nmrlearner
Today 01:01 PM
by nmrlearner Go to last post
0 2 Journal club
Go to first new post [NMR paper] Lactose Binding Induces Opposing Dynamics Changes in Human Galectins Revealed by NMR-Based Hydrogen-Deuterium Exchange.
Lactose Binding Induces Opposing Dynamics Changes in Human Galectins Revealed by NMR-Based Hydrogen-Deuterium Exchange. Related Articles Lactose Binding Induces Opposing Dynamics Changes in Human Galectins Revealed by NMR-Based Hydrogen-Deuterium Exchange. Molecules. 2017 Aug 16;22(8): Authors: Chien CH, Ho MR, Lin CH, Hsu SD Abstract Galectins are ?-galactoside-binding proteins implicated in a myriad of biological functions. Despite their highly conserved carbohydrate binding motifs with essentially identical structures, their...
nmrlearner
Today 01:01 PM
by nmrlearner Go to last post
0 2 Journal club
Go to first new post Simultaneous and spectroscopic redox molecular imaging of multiple free radical intermediates using dynamic nuclear polarization-magnetic resonance imaging #DNPNMR
From The DNP-NMR Blog: Simultaneous and spectroscopic redox molecular imaging of multiple free radical intermediates using dynamic nuclear polarization-magnetic resonance imaging #DNPNMR p.p1 {margin: 0.0px 0.0px 0.0px 36.0px; text-indent: -36.0px; font: 12.0px Helvetica} Hyodo, F., et al., Simultaneous and spectroscopic redox molecular imaging of multiple free radical intermediates using dynamic nuclear polarization-magnetic resonance imaging. Anal Chem, 2014. 86(15): p. 7234-8. https://www.ncbi.nlm.nih.gov/pubmed/25036767
nmrlearner
Today 12:56 AM
by nmrlearner Go to last post
0 5 News from NMR blogs
Go to first new post How cicadas manage to 'wing it' - Canada Free Press
http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcTfZZ7Y6e-gf2H0pZvvn1G5nw2Y7j5D_slNlZXZbSR6mSiiv1JT4ifHAT6UcFwnMaqUvbGN0W51 Canada Free Press <img alt="" height="1" width="1"> How cicadas manage to 'wing it' Canada Free Press Using solid-state nuclear magnetic resonance spectroscopy, the team found that the veins and membranes of cicada wings were composed of different proteins. They also detected differing ratios of protein to chitin ‚?? a strong, fibrous substance ‚?? in ... How cicadas manage to 'wing it' - Canada Free Press
nmrlearner
Today 12:56 AM
by nmrlearner Go to last post
0 7 Online News
Go to first new post New polymer allows researchers to study how proteins fold, function - Phys.Org
http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcT1vCTGweCRCGnIIM-HRmhT9xDnnv3hykhpSgGt-WxcRQUrDustcGzFLfUfgIKl41L5goXKEV89 Phys.Org <img alt="" height="1" width="1"> New polymer allows researchers to study how proteins fold, function Phys.Org Researchers then use a technique called nuclear magnetic resonance imaging to image the protein at an atomic level within the nanodisc. These techniques are being developed in the Ramamoorthy lab to study the structures of an enzyme called cytochrome ... and more &raquo; New polymer allows researchers to study how proteins fold,...
nmrlearner
Today 12:56 AM
by nmrlearner Go to last post
0 6 Online News
Go to first new post Posttranslational Modification of Heme b in a Bacterial Peroxidase: The Role of Heme to Protein Ester Bondsin Ligand Binding and Catalysis
Posttranslational Modification of Heme b in a Bacterial Peroxidase: The Role of Heme to Protein Ester Bondsin Ligand Binding and Catalysis http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00632/20170815/images/medium/bi-2017-00632n_0009.gif Biochemistry DOI: 10.1021/acs.biochem.7b00632 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/HAn5BdAvWAg More...
nmrlearner
Today 12:56 AM
by nmrlearner Go to last post
0 6 Journal club
Go to first new post Detecting and accounting for multiple sources of positional variance in peak list registration analysis and spin system grouping
Detecting and accounting for multiple sources of positional variance in peak list registration analysis and spin system grouping Abstract Peak lists derived from nuclear magnetic resonance (NMR) spectra are commonly used as input data for a variety of computer assisted and automated analyses. These include automated protein resonance assignment and protein structure calculation software tools. Prior to these analyses, peak lists must be aligned to each other and sets of related peaks must be grouped based on common chemical shift dimensions. Even when...
nmrlearner
Today 12:56 AM
by nmrlearner Go to last post
0 11 Journal club
Showing results 1 to 12 of 12

 
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