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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Showing results 1 to 8 of 8
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Search: Posts From Last Day
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Go to first new post Improved strategies for DNP-enhanced 2D 1H-X heteronuclear correlation spectroscopy of surfaces #DNPNMR
From The DNP-NMR Blog: Improved strategies for DNP-enhanced 2D 1H-X heteronuclear correlation spectroscopy of surfaces #DNPNMR p.p1 {margin: 0.0px 0.0px 0.0px 36.0px; text-indent: -36.0px; font: 12.0px Helvetica} Kobayashi, T., et al., Improved strategies for DNP-enhanced 2D 1H-X heteronuclear correlation spectroscopy of surfaces. Solid State Nuclear Magnetic Resonance, 2017. 87: p. 38-44. https://doi.org/10.1016/j.ssnmr.2017.08.002
nmrlearner
Yesterday 08:57 PM
by nmrlearner Go to last post
0 1 News from NMR blogs
Go to first new post New Research Reveals Atomic-Level Changes in ALS-Linked Protein - Scicasts (press release) (blog)
New Research Reveals Atomic-Level Changes in ALS-Linked Protein - Scicasts (press release) (blog) http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcQVkJGpEh64Qo6WggFB22TqL7ag-oaOLIMhb0kPnEmx_41wfXt19vczfgQAIbh-zFAcEbwmZcED Scicasts (press release) (blog) <img alt="" height="1" width="1"> New Research Reveals Atomic-Level Changes in ALS-Linked Protein Scicasts (press release) (blog) The protein collects in membrane-less organelles, where it may use its low-complexity domain to stick together, much in the way that water collects into droplets on the outside of a cold soda bottle...
nmrlearner
Yesterday 08:57 PM
by nmrlearner Go to last post
0 1 Online News
Go to first new post Protein Research Could Lead to New Drugs for ALS - R & D Magazine
http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcQQSu_9Xgheb8-oBseero3UhNIY3MgcCamVFTdhKmWJLJARBrH-ZcdanBXNwjed9YbiKhGvi7Zw R & D Magazine <img alt="" height="1" width="1"> Protein Research Could Lead to New Drugs for ALS R & D Magazine The researchers examined hnRNPA2, a protein that is mutated in disease and collects in membrane-less organelles, where they may use their low-complexity domain to stick together. The researchers used nuclear magnetic resonance spectroscopy, computer ... Proteomics Finding May Lead to Therapy Targeted at Cellular Pathway Linked to ALSGenetic...
nmrlearner
Yesterday 08:57 PM
by nmrlearner Go to last post
0 1 Online News
Go to first new post [NMR paper] Software-assisted serum metabolite quantification using NMR.
Software-assisted serum metabolite quantification using NMR. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Software-assisted serum metabolite quantification using NMR. Anal Chim Acta. 2016 Aug 31;934:194-202 Authors: Jung YS, Hyeon JS, Hwang GS Abstract The goal of metabolomics is to analyze a whole metabolome under a given set of conditions, and accurate and reliable quantitation of metabolites is crucial. Absolute concentration is more...
nmrlearner
Yesterday 08:57 PM
by nmrlearner Go to last post
0 1 Journal club
Go to first new post [NMR paper] Mathematical Development and Computational Analysis of Harmonic Phase-Magnetic Resonance Imaging (HARP-MRI) Based on Bloch Nuclear Magnetic Resonance (NMR) Diffusion Model for Myocardial Motion.
Mathematical Development and Computational Analysis of Harmonic Phase-Magnetic Resonance Imaging (HARP-MRI) Based on Bloch Nuclear Magnetic Resonance (NMR) Diffusion Model for Myocardial Motion. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--production.springer.de-OnlineResources-Logos-springerlink.gif Related Articles Mathematical Development and Computational Analysis of Harmonic Phase-Magnetic Resonance Imaging (HARP-MRI) Based on Bloch Nuclear Magnetic Resonance (NMR) Diffusion Model for Myocardial Motion. J Med Syst. 2017 Sep...
nmrlearner
Yesterday 08:57 PM
by nmrlearner Go to last post
0 1 Journal club
Go to first new post [NMR paper] Targeting a dark excited state of HIV-1 nucleocapsid by anti-retroviral thioesters revealed by NMR.
Targeting a dark excited state of HIV-1 nucleocapsid by anti-retroviral thioesters revealed by NMR. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-7315-19-Wiley_FullText_120x30_orange.png Related Articles Targeting a dark excited state of HIV-1 nucleocapsid by anti-retroviral thioesters revealed by NMR. Angew Chem Int Ed Engl. 2018 Jan 18;: Authors: Deshmukh L, Tugarinov V, Appella DH, Clore GM Abstract HIV-1 nucleocapsid (NCp7) is a two Cys2HisCys zinc knuckle (N-Zn and C-Zn)...
nmrlearner
Yesterday 08:57 PM
by nmrlearner Go to last post
0 1 Journal club
Go to first new post A new class of CEST experiment based on selecting different magnetization components at the start and end of the CEST relaxation element: an application to 1 H CEST
A new class of CEST experiment based on selecting different magnetization components at the start and end of the CEST relaxation element: an application to 1 H CEST Abstract Chemical exchange saturation transfer (CEST) experiments are becoming increasingly popular for investigating biomolecular exchange dynamics with rates on the order of approximately 50??500*s??1 and a rich toolkit of different methods has emerged over the past few years. Typically, experiments are based on the evolution of longitudinal magnetization, or in some cases two-spin...
nmrlearner
Yesterday 08:57 PM
by nmrlearner Go to last post
0 1 Journal club
Go to first new post Research reveals atomic-level changes in ALS-linked protein - EurekAlert (press release)
Research reveals atomic-level changes in ALS-linked protein - EurekAlert (press release) http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcThs4eeexkdVGsFide9UyDrq0uU25P0SvZzPawjlV9QsOaZJyx5o5GDb89JIp6O2B8ublj1dx8q EurekAlert (press release) <img alt="" height="1" width="1"> Research reveals atomic-level changes in ALS-linked protein EurekAlert (press release) The protein collects in membrane-less organelles, where it may use its low-complexity domain to stick together, much in the way that water collects into droplets on the outside of a cold soda bottle on a humid summer day....
nmrlearner
Yesterday 03:47 AM
by nmrlearner Go to last post
0 3 Online News
Showing results 1 to 8 of 8

 
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