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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Showing results 1 to 7 of 7
Search took 0.01 seconds.
Search: Posts Made By: sivanmr
Forum: NMR Questions and Answers 09-18-2008, 02:09 PM
Replies: 3
Views: 7,530
Posted By sivanmr
Do you have your human urine sample labeled with...

Do you have your human urine sample labeled with deuterium :D!!! Just kidding.... All you have to do is switch off the lock using command "locnuc=off" and use the sequence ZG2H (read the sequence...
Forum: Solid-state high-res. NMR 05-25-2007, 01:13 AM
Replies: 2
Views: 9,246
Posted By sivanmr
Solid-State NMR Reveals Structural and Dynamical Properties of a Membrane Protein

http://pubs.acs.org/cgi-bin/abstract.cgi/jacsat/2007/129/i21/abs/ja069028m.html

Solid-State NMR Reveals Structural and Dynamical Properties of a Membrane-Anchored Electron-Carrier Protein,...
Forum: Journal club 02-21-2007, 04:52 PM
Replies: 0
Views: 3,823
Posted By sivanmr
Structural biology: Molecular machinery in action

News and Views


Nature 445, 609 (8 February 2007) | <abbr title="Digital Object Identifier">doi</abbr>:10.1038/nature05566; Published online 21 January 2007

Structural biology:...
Forum: NMR Questions and Answers 08-08-2006, 01:41 PM
Replies: 1
Views: 7,147
Posted By sivanmr
If i have understood it correctly, that you have...

If i have understood it correctly, that you have spectrum is inverted in Carbon dimension. Try to process with F1 as true, that inverts the inversion. Hope it works. Well, i am telling in regard with...
Forum: Job marketplace 03-30-2006, 07:54 PM
Replies: 0
Views: 4,406
Posted By sivanmr
PhD Studentship to Study Carbohydrate-Lectin...

PhD Studentship to Study Carbohydrate-Lectin Interactions by NMR

Applications are invited for a PhD studentship at the Institute of
Molecular Pharmacy in Basel, Switzerland. The central theme of...
Forum: NMR pulse sequences 02-07-2006, 12:29 PM
Replies: 0
Views: 28,312
Posted By sivanmr
http://www.nsm.buffalo.edu/Research/GFT/main.html

http://www.nsm.buffalo.edu/Research/GFT/main.html
Forum: Journal club 01-27-2006, 11:26 AM
Replies: 0
Views: 4,537
Posted By sivanmr
Mapping structural interactions using in-cell NMR...

Mapping structural interactions using in-cell NMR spectroscopy (STINT-NMR)

David S Burz, Kaushik Dutta, David Cowburn & Alexander Shekhtman

We describe a high-throughput in-cell nuclear...
Showing results 1 to 7 of 7

 
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