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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Showing results 1 to 25 of 62
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Search: Posts Made By: markber
Forum: General 02-08-2013, 04:27 PM
Replies: 0
Views: 393
Posted By markber
Why Science is broken (and how to fix it)

An interesting post from a blog that BioNMR does not aggregate:

Why Science is broken (and how to fix it) (http://blog.f1000.com/2011/09/01/why-science-is-broken-and-how-to-fix-it/)
By Morgan...
Forum: NMR software feature requests 01-29-2013, 07:23 AM
Replies: 0
Views: 3,158
Posted By markber
Are you interested in further development of PPT-DB: the protein property prediction and testing database?

If you find PPT-DB (http://www.pptdb.ca/) useful for your research or would like to suggest a new feature, you can let program developers know here...
Forum: General 01-27-2013, 10:51 PM
Replies: 0
Views: 471
Posted By markber
Yet another example of a company that tries to push of NMR-based diagnostics and metabolomics

Vantera from Liposcience: (http://www.liposcience.com/vantera/)
Forum: General 11-27-2012, 11:26 AM
Replies: 0
Views: 359
Posted By markber
The BMRB matters

The BMRB matters

Nature Structural & Molecular Biology 19, 853 (2012) doi:10.1038/nsmb.2387
Published online 06 September 2012

NATURE STRUCTURAL & MOLECULAR BIOLOGY | EDITORIAL
...
Forum: Job marketplace 10-15-2012, 05:50 PM
Replies: 0
Views: 826
Posted By markber
TWO FACULTY POSITIONS in MOLECULAR STRUCTURE & FUNCTION THE HOSPITAL FOR SICK CHILDREN, TORONTO, ON, CANADA

TWO FACULTY POSITIONS in MOLECULAR STRUCTURE & FUNCTION
THE HOSPITAL FOR SICK CHILDREN, TORONTO, ON, CANADA

To coincide with the opening of The Hospital for Sick Children’s (SickKids) new
Centre...
Forum: NMR presentations 08-21-2012, 02:19 AM
Replies: 0
Views: 5,521
Posted By markber
Humans, aliens, and eHarmony or why there is no such thing as a free lunch in protein structure determination from sparse experimental data

<img src="http://images.slidesharecdn.com/groupmeetingpresentations72712fcut4-120820213018-phpapp01/95/slide-1-728.jpg?1345517350" width=60%>


Downloads: A new file has been added by markber:
...
Forum: NMR Questions and Answers 08-19-2012, 11:10 PM
Replies: 2
Views: 1,054
Posted By markber
Hi Chris, A bug in their script, may be? ...

Hi Chris,

A bug in their script, may be?

If you complain, they may be able to fix it.

You can post any kind of info about GARANT on BioNMR to make more people aware about it.

You may...
Forum: Conferences 02-26-2012, 10:22 PM
Replies: 0
Views: 759
Posted By markber
Three-days HADDOCK workshop in Vilnius

LINK (http://www.wenmr.eu/wenmr/three-days-haddock-workshop-vilnius)

Description

HADDOCK is an information-driven docking program developed at Utrecht University, which is widely used in the...
Forum: NMR software 02-23-2012, 10:21 PM
Replies: 0
Views: 1,196
Posted By markber
GeNMR - template-based structure generation from NMR data

GeNMR website (http://www.genmr.ca)

GeNMR (GEnerate NMR structures) is a web server for template-based or ab initio generation of 3D protein structures using NOE-derived distance restraints and...
Forum: NMR software 02-23-2012, 09:40 PM
Replies: 0
Views: 1,158
Posted By markber
CS23D - generating protein structure from NMR chemical shifts and sequence homology

CS23D website (http://www.cs23d.ca)

CS23D is a web server for rapidly generating accurate 3D protein structures using only assigned NMR chemical shifts as input. CS23D uses a combination of...
Forum: NMR software 02-02-2012, 11:36 PM
Replies: 0
Views: 1,953
Posted By markber
RCI - Random Coil Index for predicting protein flexibility from chemical shifts

RCI website (http://www.bionmr.com/forum/redirector.php?url=http%3A%2F%2Fwishart.biology.ualberta.ca%2Frci%2F)

RCI method predicts protein flexibility by calculating the Random Coil Index from...
Forum: NMR software 01-16-2012, 02:03 AM
Replies: 5
Views: 2,218
Posted By markber
Hi Christian, I sent you a BioNMR private...

Hi Christian,

I sent you a BioNMR private message with a link to download a version of XEASY. It was on one of my 2002 backup CDs. It could be much older than 2002 though.

Cheers,

Mark
Forum: NMR software 01-06-2012, 08:38 AM
Replies: 5
Views: 2,218
Posted By markber
Hi Christian, Welcome to BioNMR.com! I...

Hi Christian,

Welcome to BioNMR.com!

I worked in NMR labs where XEASY was used a lot and was considered a very useful program.

If you want, we can try to put XEASY on BioNMR download site...
Forum: Cashed version of protein-nmr.org.uk 11-07-2011, 04:17 AM
Replies: 0
Views: 9,108
Posted By markber
Protein NMR - A Practical Guide - Solid-state MAS NMR Spectra

Below is a Google-cached version of Protein NMR - A Practical Guide - Solid-state MAS NMR Spectra...
Forum: Cashed version of protein-nmr.org.uk 11-07-2011, 01:25 AM
Replies: 0
Views: 6,387
Posted By markber
Protein NMR - A Practical Guide - Solution NMR Assignment - Practice

Below is a Google-cached version of Protein NMR - A Practical Guide - Solution NMR Assignment - Practice...
Forum: Cashed version of protein-nmr.org.uk 11-06-2011, 10:27 PM
Replies: 0
Views: 3,923
Posted By markber
Protein NMR - A Practical Guide - Glossary / Abbreviations

Below is a Google-cached version of Protein NMR - A Practical Guide - Glossary / Abbreviations...
Forum: Cashed version of protein-nmr.org.uk 11-06-2011, 09:42 PM
Replies: 0
Views: 6,701
Posted By markber
Protein NMR - A Practical Guide - Solution NMR Assignment Theory

Below is a Google-cached version of Protein NMR - A Practical Guide - Solution NMR Assignment Theory...
Forum: Cashed version of protein-nmr.org.uk 11-06-2011, 08:45 PM
Replies: 0
Views: 7,258
Posted By markber
Protein NMR - A Practical Guide - Solution NMR Spectra

Below is a Google-cached version of Protein NMR - A Practical Guide (http://www.bionmr.com/forum/Protein%20NMR%20-%20A%20Practical%20Guide%20-%20Solution%20NMR%20Spectra) - Solution NMR Spectra...
Forum: Cashed version of protein-nmr.org.uk 11-06-2011, 08:22 PM
Replies: 0
Views: 4,929
Posted By markber
Protein NMR - A Practical Guide

Below is a Google-cached version of Protein NMR - A Practical Guide...
Forum: General 04-22-2011, 08:26 PM
Replies: 1
Views: 8,532
Posted By markber
Yet another interesting comment: By Rex...

Yet another interesting comment:

By Rex Williams:
Forum: General 04-21-2011, 11:16 AM
Replies: 1
Views: 8,532
Posted By markber
Not-NMR: interesting comments about article "Fix the PhD" in Nature

See the article here (http://www.nature.com/nature/journal/v472/n7343/full/472259b.html)

Comments:

B. B. Goel:




Xianfa Xie:
Forum: NMR research groups 11-14-2010, 06:26 AM
Replies: 0
Views: 21,367
Posted By markber
Prof. Konstantin Pervushin's NMR group

Prof. Konstantin Pervushin affiliation:
Structural Biology
Biozentrum, University of Basel
Basel / Switzerland

...
Forum: NMR research groups 11-01-2010, 07:53 PM
Replies: 0
Views: 17,969
Posted By markber
Michael Gryk's NMR group, University of Connecticut, USA

Below is a copy of information about Gryk's lab from the website of University of Connecticut.


<table width="100%" border="0" cellpadding="0" cellspacing="0"><tbody><tr><td style="padding:...
Forum: NMR software 11-01-2010, 07:45 PM
Replies: 0
Views: 24,971
Posted By markber
CONNJUR - open source integration environment for biomolecular NMR data analysis

CONNJUR Project website (http://www.bionmr.com/forum/redirector.php?url=http%3A%2F%2Fconnjur.uchc.edu%2F)


The CONNJUR Project...
Forum: Job marketplace 11-01-2010, 07:43 PM
Replies: 0
Views: 13,745
Posted By markber
NMR Postdoctoral Associate - Steve M. King group - University of Connecticut

An NIH-funded postdoctoral position is available immediately in the laboratory of Dr. Steve M. King in the Department of Biochemistry. The project involves determination of the structure and dynamics...
Showing results 1 to 25 of 62

 
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