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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Showing results 1 to 6 of 6
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Go to first new post [NMR thesis] Solid State NMR at High Magnetic Fields Using Multiple Pulse Techniques
Solid State NMR at High Magnetic Fields Using Multiple Pulse Techniques Carson, Douglas Glenn (1981) Solid State NMR at High Magnetic Fields Using Multiple Pulse Techniques. Dissertation (Ph.D.), California Institute of Technology. http://resolver.caltech.edu/CaltechETD:etd-10102006-095702 More...
nmrlearner
Today 02:57 AM
by nmrlearner Go to last post
0 1 NMR theses
Go to first new post Chromophore Distortions in Photointermediates of Proteorhodopsin Visualized by Dynamic Nuclear Polarization-Enhanced Solid-State NMR #DNPNMR #NMR #SSNMR
From The DNP-NMR Blog: Chromophore Distortions in Photointermediates of Proteorhodopsin Visualized by Dynamic Nuclear Polarization-Enhanced Solid-State NMR #DNPNMR #NMR #SSNMR p.p1 {margin: 0.0px 0.0px 0.0px 36.0px; text-indent: -36.0px; font: 12.0px Helvetica} Mehler, M., et al., Chromophore Distortions in Photointermediates of Proteorhodopsin Visualized by Dynamic Nuclear Polarization-Enhanced Solid-State NMR. J. Am. Chem. Soc., 2017. 139(45): p. 16143-16153. https://www.ncbi.nlm.nih.gov/pubmed/29027800
nmrlearner
Today 02:57 AM
by nmrlearner Go to last post
0 1 News from NMR blogs
Go to first new post Protein‚??Ligand Interactions, Volume 53. Methods and Principles in Medicinal Chemistry ‚?? Biotechnology, Healthcare ... - satPRnews (press release)
Protein‚??Ligand Interactions, Volume 53. Methods and Principles in Medicinal Chemistry ‚?? Biotechnology, Healthcare ... - satPRnews (press release) <img alt="" height="1" width="1"> Protein‚??Ligand Interactions, Volume 53. Methods and Principles in Medicinal Chemistry ‚?? Biotechnology, Healthcare ... satPRnews (press release) The first part provides a basic understanding of the factors governing protein‚??ligand interactions, followed by a comparison of key experimental methods (calorimetry, surface plasmon resonance, NMR) used in generating interaction data. The second half ... ...
nmrlearner
Today 02:57 AM
by nmrlearner Go to last post
0 1 Online News
Go to first new post Transport-RelevantProtein Conformational Dynamics and Water Dynamics on Multiple TimeScales in an Archetypal Proton Channel: Insights from Solid-StateNMR
Transport-RelevantProtein Conformational Dynamics and Water Dynamics on Multiple TimeScales in an Archetypal Proton Channel: Insights from Solid-StateNMR Venkata S. Mandala, Martin D. Gelenter and Mei Hong http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.7b12464/20180122/images/medium/ja-2017-12464m_0008.gif Journal of the American Chemical Society DOI: 10.1021/jacs.7b12464 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/ctiYCDGHbFI
nmrlearner
Today 02:57 AM
by nmrlearner Go to last post
0 1 Journal club
Go to first new post Droplets of ALS Protein Measured at Atomic Level - Technology Networks
Droplets of ALS Protein Measured at Atomic Level - Technology Networks http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcTUIBVKntE1kFXHE3bRP_1eiViHKCjYC0RxNQob95fWg__jk8-ayuyq7aEpa6aBTS5CvgnpsvKi Technology Networks <img alt="" height="1" width="1"> Droplets of ALS Protein Measured at Atomic Level Technology Networks The protein collects in membrane-less organelles, where it may use its low-complexity domain to stick together, much in the way that water collects into droplets on the outside of a cold soda bottle on a humid summer day. Until the publication of this ......
nmrlearner
Yesterday 01:16 PM
by nmrlearner Go to last post
0 2 Online News
Go to first new post [NMR paper] 1H, 13C and 15N NMR assignments of cyclophilin LRT2 (OsCYP2) from rice.
1H, 13C and 15N NMR assignments of cyclophilin LRT2 (OsCYP2) from rice. 1H, 13C and 15N NMR assignments of cyclophilin LRT2 (OsCYP2) from rice. Biomol NMR Assign. 2018 Jan 20;: Authors: Acevedo LA, Nicholson LK Abstract Cyclophilins are enzymes that catalyze the isomerization of a prolyl-peptide bond and are found in both prokaryotes and eukaryotes. LRT2 (also known as OsCYP2) is a cyclophilin in rice (Oryza sativa), that has importance in lateral root development and stress tolerance. LRT2 is 172 amino acids long and has a...
nmrlearner
Yesterday 01:16 PM
by nmrlearner Go to last post
0 3 Journal club
Showing results 1 to 6 of 6

 
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