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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Showing results 1 to 4 of 4
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Search: Threads Started By: Derek
  Thread / Thread Starter Last Post Replies Views Forum
Go to first new post NMR Spectroscopy for Microbiologists - David Wishart, University of Alberta
David Wishart gives an overview of NMR for his Microbiology class - this could make a good starting point for any biologists new to NMR.
Derek
09-12-2008 10:48 PM
by Derek Go to last post
0 6,674 Educational web pages
Go to first new post Protein Structure Prediction: Threading & Homology Modeling - Thomas Steinke
Protein Structure Prediction: Threading & Homology Modeling - Thomas Steinke, Zuse Institute Berlin, Berlin Center for Genom Based Bioinformatics http://lectures.molgen.mpg.de/Algorithmische_Bioinformatik_WS0405/material/Steinke_lecture_19_1.pdf
Derek
09-12-2008 09:21 PM
by Derek Go to last post
0 9,233 Educational web pages
Go to first new post NMR: Basics: Spin, Isotopes, Couplings, FTNMR - Alexej Jerschow
NMR Basics: Spin, Isotopes, Couplings, FTNMR - Alexej Jerschow, NYU School of Medicine (part 1) (part 2)
Derek
09-12-2008 08:27 PM
by Derek Go to last post
0 5,840 Educational web pages
Go to first new post NMR of paramagnetic proteins - the Biophysical Society
Ivano Bertini and Claudio Luchinat, for the Biophysical Society, talk about NMR of paramagnetic proteins: http://www.biophysics.org/education/ibertini.pdf
Derek
09-12-2008 07:45 PM
by Derek Go to last post
0 5,526 Educational web pages
Showing results 1 to 4 of 4

 
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