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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Showing results 1 to 4 of 4
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Search: Posts Made By: Deano
Forum: Journal club 08-14-2008, 10:08 PM
Replies: 0
Views: 3,168
Posted By Deano
ICMRBS founder’s medal 2006: Biological solid-state NMR, methods and applications

ICMRBS founder’s medal 2006: Biological solid-state NMR, methods and applications (http://www.springerlink.com/content/gj3837m2447253k2/?p=3559810511414d80b36c22da3d4b6da2&pi=5)
Marc Baldus
Journal...
Forum: Journal club 08-14-2008, 10:01 PM
Replies: 0
Views: 3,899
Posted By Deano
Cell-free protein synthesis of perdeuterated proteins for NMR studies

Cell-free protein synthesis of perdeuterated proteins for NMR studies (http://www.springerlink.com/content/e36451521822lk84/?p=fa1b946cd3b04af8b69ebf43326f0d53&pi=6)
Touraj Etezady-Esfarjani,...
Forum: Journal club 08-14-2008, 09:57 PM
Replies: 0
Views: 3,306
Posted By Deano
CheckShift: automatic correction of inconsistent chemical shift referencing

CheckShift: automatic correction of inconsistent chemical shift referencing (http://www.springerlink.com/content/h776116k8551h626/?p=fa1b946cd3b04af8b69ebf43326f0d53&pi=5)
Simon W. Ginzinger, Fabian...
Forum: Journal club 08-14-2008, 09:53 PM
Replies: 0
Views: 3,141
Posted By Deano
Spatially encoded strategies in the execution of biomolecular-oriented 3D NMR experiments

Spatially encoded strategies in the execution of biomolecular-oriented 3D NMR experiments (http://www.springerlink.com/content/f632u73g33810094/?p=2ca5aa5de40440f4b719188b5db49ad1&pi=3)
Mor...
Showing results 1 to 4 of 4

 
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