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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Showing results 1 to 5 of 5
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Search: Threads Started By: sivanmr
  Thread / Thread Starter Last Post Replies Views Forum
Go to first new post Solid-State NMR Reveals Structural and Dynamical Properties of a Membrane Protein
http://pubs.acs.org/cgi-bin/abstract.cgi/jacsat/2007/129/i21/abs/ja069028m.html Solid-State NMR Reveals Structural and Dynamical Properties of a Membrane-Anchored Electron-Carrier Protein, Cytochrome b<sub>5</sub> <aui auinm="Durr, U. H. N."> <aui auinm="Yamamoto, K."> <aui auinm="Im, S.-C."> <aui auinm="Waskell, L."> <aui auinm="Ramamoorthy, A."> <aug><aul></aul></aug></aui></aui></aui></aui></aui> <au>Ulrich H. N. Dürr,</au> <au>Kazutoshi Yamamoto,</au><au>Sang-Choul Im,</au><au>Lucy Waskell,and </au><au>Ayyalusamy Ramamoorthy*</au> *ramamoor@umich.edu <aff></aff> ...
sivanmr
05-30-2007 12:54 PM
by niteeshgrandhi Go to last post
2 10,135 Solid-state high-res. NMR
Go to first new post Structural biology: Molecular machinery in action
News and Views Nature 445, 609 (8 February 2007) | <abbr title="Digital Object Identifier">doi</abbr>:10.1038/nature05566; Published online 21 January 2007 Structural biology: Molecular machinery in action Ad Bax and Dennis A. Torchia Abstract
sivanmr
02-21-2007 04:52 PM
by sivanmr Go to last post
0 4,130 Journal club
Go to first new post Phd Studentship in NMR
PhD Studentship to Study Carbohydrate-Lectin Interactions by NMR Applications are invited for a PhD studentship at the Institute of Molecular Pharmacy in Basel, Switzerland. The central theme of the research will focus on the use of Nuclear Magnetic Resonance Spectroscopy to characterize Carbohydrate-Lectin interactions. The student would join the group of Prof. Beat Ernst and would be under the guidance of groups Habilitant, Dr. Brian Cutting. The student will benefit from daily interactions with others scientists
sivanmr
03-30-2006 07:54 PM
by sivanmr Go to last post
0 4,668 Job marketplace
Go to first new post Pulse programs
http://www.nsm.buffalo.edu/Research/GFT/main.html
sivanmr
02-07-2006 12:29 PM
by sivanmr Go to last post
0 37,554 NMR pulse sequences
Go to first new post Mapping structural interactions using in-cell NMR spectroscopy (STINT-NMR)
Mapping structural interactions using in-cell NMR spectroscopy (STINT-NMR) David S Burz, Kaushik Dutta, David Cowburn & Alexander Shekhtman We describe a high-throughput in-cell nuclear magnetic resonance (NMR)-based method for mapping the structural changes that accompany protein-protein interactions (STINT-NMR). The method entails sequentially expressing two (or more) proteins within a single bacterial cell in a time-controlled manner and monitoring the protein interactions using in-cell NMR spectroscopy. The resulting spectra provide a complete titration of the interaction and define...
sivanmr
01-27-2006 11:26 AM
by sivanmr Go to last post
0 4,903 Journal club
Showing results 1 to 5 of 5

 
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