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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Showing results 1 to 22 of 22
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Search: Threads Started By: ale51
  Thread / Thread Starter Last Post Replies Views Forum
Go to first new post NMR educational resources
NMR Education Arthur Edison's NMR course EMBL EMBO 2003 James Keeler's Lectures NMR & X-ray crystallography glossary NMR Acronyms Library NMR course by Gordon Rule NMR information center
ale51
12-15-2009 10:01 AM
by arvin Go to last post
1 50,824 BioNMR Wiki
Go to first new post NMR Commercial Companies
Commercial Companies Norell, Inc - is dedicated to the advancement of NMR Spectroscopy by producing world-class NMR sample tubes. We conduct research and development, use state-of-the-art equipment and review our methods of operation in a never- ending effort to continually improve the quality of the products and services we offer. Gilson 215 Liquid Handler Just right for that BEST/LC probe you just bought Minspec Table top low resolution NMR. For QA labs, the food, plastics, polymer, petroleum, and pharmaceuticals industry use. GMW Associates A supplier of magnet power supplies. These...
ale51
12-15-2009 09:57 AM
by arvin Go to last post
3 81,883 BioNMR Wiki
Go to first new post Molecular Modeling
Molecular ModelingWHAT If Calculation AutoStructure: Automated Determination of Protein Structures from NMR Data GenCons Hyper Queen Analysis Database of Macromolecular Movements with Associated Tools for Geometric Analysis PDBStat Dynamics
ale51
08-23-2006 04:46 PM
by ZMM Go to last post
2 33,022 BioNMR Wiki
Go to first new post Research Facilities in the USA
Rearch Facilities in USABiomedical Magnetic Resonance Laboratory, UIUC, USA The Biomedical Magnetic Resonance Laboratory (BMRL) provides facilities, equipment and training for research on nuclear magnetic resonance imaging, spectroscopy, and relaxometry, and for their applications in biology, medicine, and other fields. It incorporates a National Institutes of Health National Center for Research Resources Biomedical Technology Research Resource. Staff - Prof. Paul C. Lauterbur, Head - Prof. M. Joan Dawson, Associate Director Biomolecular NMR Facility, University of Utah Health...
ale51
04-03-2005 07:36 PM
by ale51 Go to last post
0 61,934 BioNMR Wiki
Go to first new post NMR Groups in the USA
NMR Senior Investigators at NIH, USA: Peter J. Basser, Chief, Section on Tissue Biophysics Biomimetics, LIMB, National Institute of Child Health Human Development. Ad Bax , National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK). R. Andrew Byrd, Structural Biophysics Laboratory, National Cancer Institute. G. Marius Clore , NIDDK.
ale51
03-30-2005 08:49 PM
by ale51 Go to last post
0 79,280 BioNMR Wiki
Go to first new post test
Advanced Materials Technologies Ltd,http://www.isotope-amt.com AMT, supplies stable isotopes, deuterated solvents and high purity materials for medical and chemical research. Cambridge Isotope Laboratorieshttp://www.isotope.com/cil/index.html (CIL) A producer of stable isotope labeled compounds and stable isotope separations. Center of Molecular Researchhttp://www.h2o18.com Representative of a Russian producer of Oxygen-18 water situated in Saint Petersburg Chemgashttp://www.chemgas.com/ Chemgas supplies high purity rare gases and isotopically enriched gases. CNL Scientific...
ale51
02-22-2005 04:22 AM
by ale51 Go to last post
0 17,777 A test forum
Go to first new post Research Groups in the UK
Research Groups in the UKBiological NMR Unit - The University of Birmingham The Biological NMR Unit was established in 1990 as a joint venture between The School of Biochemistry and some research groups in the School of Medicine, notably the Department of Rheumatology and The CRC Institute for Cancer Studies. Biomembrane Structure Unit, University of Oxford Solid State NMR performed on Biological Membranes. Structure determination and protein-lipid and protein-ligand interactions Edinburgh Biomolecular NMR Unit Our research focus is on protein structure. The main tool we use is
ale51
01-29-2005 03:46 AM
by ale51 Go to last post
0 39,331 BioNMR Wiki
Go to first new post Organizations
Organizations ALMA Analytical Laboratory Managers Association AMMRL Member Database This is the entry point to John Chung's member database of the Association of Managers of Magnetic Resonance Laboratories. AMMRL- Association of Managers in Magnetic Resonance Laboratories Biophysical Society CCPN - A Collaborative Computing Project for the NMR Community The CCP is funded by the BBSRC with the aim of CCPN performing a service for NMR spectroscopists analogous to that of CCP4 in the X-ray crystallography community.
ale51
01-29-2005 03:39 AM
by ale51 Go to last post
0 65,430 BioNMR Wiki
Go to first new post Journals
Journals Applied Magnetic Resonance Applied Magnetic Resonance provides an international forum for the application of magnetic resonance in physics, chemistry, biology, medicine, geochemistry, ecology, engineering, and related fields. Applied Magnetic Resonance publishes original articles with a strong emphasis on new applications of the technique and on new experimental methods. Routine applications to structural chemistry are outside the scope of the journal. Applied Spectroscopy Reviews Applied Spectroscopy Reviews provides the latest information on the
ale51
01-29-2005 03:36 AM
by ale51 Go to last post
0 65,139 BioNMR Wiki
Go to first new post Research Groups in Germany
Research Groups in Germany (the ones that have websites in english)Abteilung für Biophysikalische Chemie, Biozentrum, Uni Frankfurt, Germany AK Siehl, Division of Organic Chemistry I, Uni Ulm, Germany AK Stegmann, Uni Tübingen, Germany Arbeitsgruppe NMR, Institut für Chemie, Humboldt Universitaet Berlin, Germany Department of NMR-supported Structural Biology (FMP), Berlin, Using nuclear magnetic resonance (NMR) spectroscopy, the depart- ment characterises the structures of proteins involved in inter- and intracellular signal release and transduction. The results of this work are...
ale51
01-29-2005 03:11 AM
by ale51 Go to last post
0 70,012 BioNMR Wiki
Go to first new post Research Groups in Canada
Research Groups in CanadaARMRC - The Atlantic Region Magnetic Resonance (Dalhousie) The Atlantic Region Magnetic Resonance Centre was established in 1981 by the chemistry departments of the Atlantic region universities and the Atlantic Research Laboratory of the National Research Council. The Centre consists of three Bruker NMR spectrometers with superconducting magnets: MSL-200, AC-250, AMX-400. The Bruker AC-250 is used for the acquisition of routine H-1, F-19, P-31, and C-13 NMR spectra. Biomolecular NMR Group, Ontario Cancer Institute, University of Toronto The Arrowsmith and...
ale51
01-29-2005 02:04 AM
by ale51 Go to last post
0 55,564 BioNMR Wiki
Go to first new post Research Groups in Asia
Research Groups in AsiaDepartment of Chemical Physics, The Weizmann Institute of Science, Israel Frydman Group, Weizmann Institute, Rehovot, Israel Research in our group focuses on the development of new techniques in nuclear magnetic resonance (NMR) analysis, and on the application of these and other advanced methods to the resolution of chemical problems. Most of this work is carried out in our three laboratory-built NMR spectrometers (4.7, 7.2 and 11.8 T double- and triple-tuned instruments), which are equipped with an array of solution, solid phase and microimaging accessories....
ale51
01-29-2005 01:50 AM
by ale51 Go to last post
0 37,948 BioNMR Wiki
Go to first new post Theory
Theory2D NMR Introduction to (high resolution) multidimensional solution NMR spectroscopy. Description of line-shapes, product operator formalism, phase-cycling, pulsed field gradients and relaxation. By James Keeler. Also contains the full text of "EMBO Course: Il Ciocco" lecture notes. Applications for measuring scalar and residual dipolar couplings in proteins By Perttu Permi. The entire paper and dissertation is available in pdf format. Biomolecular structure determination by using solid state NMR spectroscopy Solid state NMR methodology for structure determination of uniformly...
ale51
01-29-2005 01:37 AM
by ale51 Go to last post
0 24,394 Educational web pages
Go to first new post Theory
Theory2D NMR Introduction to (high resolution) multidimensional solution NMR spectroscopy. Description of line-shapes, product operator formalism, phase-cycling, pulsed field gradients and relaxation. By James Keeler. Also contains the full text of "EMBO Course: Il Ciocco" lecture notes. Applications for measuring scalar and residual dipolar couplings in proteins By Perttu Permi. The entire paper and dissertation is available in pdf format. Biomolecular structure determination by using solid state NMR spectroscopy Solid state NMR methodology for structure determination of uniformly...
ale51
01-29-2005 01:37 AM
by ale51 Go to last post
0 89,813 BioNMR Wiki
Go to first new post Sample preparation
Sample preparation Samples The Samples program is designed to collect and store some essential information pertaining to the samples used to record the spectra. Residual Dipolar Couplings Bicelle preparation notes from Avanti Instructions for bicelle preparation from Avanti
ale51
01-29-2005 01:35 AM
by ale51 Go to last post
0 55,286 BioNMR Wiki
Go to first new post Pulse programs
Pulse programs Bruker pulse programs Ad Bax's pulse sequence library Ad Bax's note: This library contains recently published pulse sequences that have been tested on our equipment. By downloading, viewing or using any of them you acknowledge our rules as outlined in disclaimer and copyright. Bruker pulse sequences from Gordon Rule Gordon Rule note: ALL of these employ gradients for artifact suppression. None are sensitivity enhanced. In all HN experiments the water is suppressed by a watergate-type sequence. In some cases crusher gradients are also used. These sequences have been...
ale51
01-29-2005 01:23 AM
by ale51 Go to last post
0 68,820 BioNMR Wiki
Go to first new post NMR conferences
NMR conferencesBruker conferences ENC International Society of Magnetic Resonance Keystone Symposia SMAH The International Society for Magnetic Resonance in Medicine Lists of NMR conferences Bruker-Biospin
ale51
01-29-2005 12:22 AM
by ale51 Go to last post
0 56,523 BioNMR Wiki
Go to first new post Vendors
VendorsSpectrometer manufacturers JEOL Alignment media for RDC measurement Avanti Isotopically-Enriched Compounds C/D/N Isotopes Cambridge Isotope Laboratories ICON (Isotope) Services Isotec, Inc
ale51
01-25-2005 05:18 AM
by ale51 Go to last post
0 180,819 BioNMR Wiki
Go to first new post Sites with NMR links
Sites with NMR linksNMR-CTP tutorial
ale51
01-25-2005 05:12 AM
by ale51 Go to last post
0 47,470 BioNMR Wiki
Go to first new post Research Groups
Research GroupsThe NetherlandsBiophysical Chemistry, University of Nijmegen The central research theme at the department of Biophysical Chemistry concerns the study of biomolecular interactions of proteins, RNA, DNA, and their complexes. High-resolution NMR is the predominant technique employed in the studies, although other biophysical techniques are also routinely used. Sattler, Michael Current projects focus on protein/protein and protein/RNA interactions at the pre-mRNA intron during the assembly of the pre-spliceosome. United States Dr. Ann McDermott, Columbia University ...
ale51
01-25-2005 04:52 AM
by ale51 Go to last post
0 61,621 BioNMR Wiki
Go to first new post NMR Software
NMR SoftwareLinuxNMR Programs are listed sequentially, according to the normal order of use in a typical NMR structure determination project. Rather than providing detailed tutorials on the use of the various programs, a few comments on the general use of each program are provided, as well as the literature citations and links to the original documentation. Auto-assignment programs AutoAssign AutoAssign is a constraint-based expert system for automating the analysis of backbone resonance assignments using NMR spectra of small proteins. Zimmerman, D.E., Kulikowski, C.A., Huang, Y.,...
ale51
01-25-2005 04:39 AM
by ale51 Go to last post
0 27,872 BioNMR Wiki
Go to first new post Theory
Mailing Lists and Message Boardsbionet.structural-nmr
ale51
01-24-2005 04:51 AM
by ale51 Go to last post
0 21,588 Educational web pages
Showing results 1 to 22 of 22

 
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