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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Showing results 1 to 7 of 7
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Search: Posts Made By: premprakash
Forum: Educational web pages 03-31-2007, 12:08 PM
Replies: 1
Views: 7,086
Posted By premprakash
Hello Tim Logan I am not able to view your...

Hello Tim Logan
I am not able to view your lecture, they are not available on the server.
May i be able to get them?
regards
Prem
Forum: NMR Questions and Answers 03-30-2007, 03:21 PM
Replies: 2
Views: 9,461
Posted By premprakash
Rdc

Hi!
I wanted to know about using PALES for measuring the dipolar couplings
I have the program on a Linux SuSe , I do not have C' Compiler or fortran. are they require to get the PALES working....
Forum: Protein-ligand interactions 03-30-2007, 03:03 PM
Replies: 1
Views: 25,932
Posted By premprakash
Re:

Hi!
Interesting work!
cheers
Prem Prakash Pathak:)
Forum: NMR Questions and Answers 03-30-2007, 02:57 PM
Replies: 3
Views: 21,683
Posted By premprakash
Re

Hi!
I think in a NOESY based structure determination, all the program that are available are dealing with the volume based integration.
In my view volume based integration would be more better as...
Forum: NMR software 03-30-2007, 02:48 PM
Replies: 2
Views: 8,628
Posted By premprakash
Re:

Hi! have posted a program which predict the chemical sift of random coil by submitting the one letter code sequence of protein.
Are you working on protein structure problem? I am working on solving...
Forum: NMR software 03-30-2007, 02:42 PM
Replies: 2
Views: 7,436
Posted By premprakash
re:

Hi! You can use CARA, and there are many more, the one which you know better will become easy for you. Checkout any program. I think CARA is one of the goods program developed.
Cheers!
Forum: NMR Questions and Answers 03-29-2007, 02:33 PM
Replies: 0
Views: 4,634
Posted By premprakash
Smile protein structure calculation

Hi! every one!
I wanted to get in contact with people solving the structure of protein by using NMR. I am learning the process and i have many basics problem related with the work.

cheers!
Showing results 1 to 7 of 7

 
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