Students dive into 3-D proteins - Mother Nature Network

		BioNMR > NMR community > Online News
Students dive into 3-D proteins - Mother Nature Network

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

06-08-2011, 01:20 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,174

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Students dive into 3-D proteins - Mother Nature Network

Students dive into 3-D proteins - Mother Nature Network

Students dive into 3-D proteins
Mother Nature Network
For decades, with funding from the National Science Foundation (NSF), Hinton has used nuclear magnetic resonance (NMR) to look at protein structure and function. But he wanted to find a way to educate and engage students about his discoveries. ...

and more »
Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
PhD students and postdocs positions PhD students and postdocs positions PhD students and postdocs positions on new applications of NMR in environmental sciences Short description of projects: Project1: Use high-resolution NMR to measure intramolecular variation of the heavy hydrogen isotope deuterium in historical plant samples, to link past climate with physiological changes, and to define plant-climate interactions relevant for future plant productivity. Project2: Apply quantitative 13C NMR to primary metabolites and to tree rings, to establish links between intramolecular 13C variation and partitioning of metabolites...	nmrlearner	Job marketplace	0	08-09-2011 02:02 AM
Structural biology: Proteins in dynamic equilibrium - Nature.com Structural biology: Proteins in dynamic equilibrium - Nature.com <img alt="" height="1" width="1" /> Structural biology: Proteins in dynamic equilibrium Nature.com Changes in global orientations of protein domains, or in the shape and size of molecular assemblies, are more difficult to characterize using NMR alone, ... Read here	nmrlearner	Online News	0	12-23-2010 02:43 AM
[NMR paper] RESCUE: an artificial neural network tool for the NMR spectral assignment of proteins RESCUE: an artificial neural network tool for the NMR spectral assignment of proteins. Related Articles RESCUE: an artificial neural network tool for the NMR spectral assignment of proteins. J Biomol NMR. 1999 Sep;15(1):15-26 Authors: Pons JL, Delsuc MA The assignment of the 1H spectrum of a protein or a polypeptide is the prerequisite for advanced NMR studies. We present here an assignment tool based on the artificial neural network technology, which determines the type of the amino acid from the chemical shift values observed in the 1H...	nmrlearner	Journal club	0	11-18-2010 08:31 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off