Simpler model gets to the point with proteins - Phys.Org

		BioNMR > NMR community > Online News
Simpler model gets to the point with proteins - Phys.Org

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

06-06-2018, 01:42 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,173

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Simpler model gets to the point with proteins - Phys.Org

Phys.Org

Simpler model gets to the point with proteins
Phys.Org
Clementi said the data can come from any one or a combination of sources like Förster resonance energy transfer (FRET), mutagenesis or nuclear magnetic resonance. The computational framework takes advantage of Markov models to combine multiple ...

Simpler model gets to the point with proteins - Phys.Org
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Nanodiscs catch misfolding proteins red-handed - Phys.org - Phys.Org Nanodiscs catch misfolding proteins red-handed - Phys.org - Phys.Org <img alt="" height="1" width="1"> Nanodiscs catch misfolding proteins red-handed - Phys.org Phys.Org When proteins misfold, accumulate and clump around insulin-producing cells in the pancreas, they kill cells. Now, researchers, including University of Michigan biophysicists, have obtained a structural snapshot of these proteins ... and more » Read here	nmrlearner	Online News	0	12-06-2017 11:04 PM
Light microscopy provides a deep look into protein structure - Phys.org - Phys.Org Light microscopy provides a deep look into protein structure - Phys.org - Phys.Org http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcQG69FMdjaOzVdvO8fNDx9c1t6uv0SeGKAywKjRdVRRma0SZH4sGlq9-_q3JW8xkTHitn6biYqD Phys.Org <img alt="" height="1" width="1"> Light microscopy provides a deep look into protein structure - Phys.org Phys.Org Light microscopy continues to reveal the microscopic world at an ever increasing resolution. Using a new method coined COLD, scientists at the Max Planck ... and more »	nmrlearner	Online News	0	01-25-2017 11:13 PM
Study of PEGylated model protein reveals porous structure based on PEG size - Phys.Org Study of PEGylated model protein reveals porous structure based on PEG size - Phys.Org http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcQdT1VtDs_349GghNDjMV50tdw7g0UzZNnkRkMt-SgVH2a6hHSvjT8JY4N42n5PGHBQ_JntWNc Phys.Org <img alt="" height="1" width="1"> Study of PEGylated model protein reveals porous structure based on PEG size Phys.Org NMR studies using 1H-15N heteronuclear single-quantum correlation spectroscopy showed that the PEG-Pc had well-dispersed resonances that indicated the protein remained folded in a stable conformation. Chemical shift perturbations were only...	nmrlearner	Online News	0	09-22-2015 06:40 PM
Quantum Criticality in life's proteins - Phys.Org Quantum Criticality in life's proteins - Phys.Org http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcQmmwn4be-zSvmVia_TPrZnP9wSO0Vi4PWFRAoab1bWQiR7ZtGMlOjrGOQYnjAJsceK0vyZcMEu Phys.Org <img alt="" height="1" width="1"> Quantum Criticality in life's proteins Phys.Org In particular, they selected NMR spectra from the Protein Data Bank and used a technique known as the extended Huckel Hamiltonion method to calculate HOMO/LUMO orbitals for the proteins. For more comments on HOMO/LUMO orbital calculations you ...	nmrlearner	Online News	0	04-13-2015 09:11 PM
Proteins' passing phases revealed - Phys.Org <img alt="" height="1" width="1" /> Proteins' passing phases revealed Phys.Org X-ray crystallography and, more recently, nuclear magnetic resonance spectroscopy are the most common tools to see how the amino acids in a protein chain arrange themselves based on their attractive and repulsive energies, but they say nothing about ... Proteins' passing phases revealed - Phys.Org More...	nmrlearner	Online News	0	12-05-2013 06:57 PM
Erratic proteins: New insights into a transport mechanism - Phys.Org <img alt="" height="1" width="1" /> Erratic proteins: New insights into a transport mechanism Phys.Org "Only through employing modern nuclear magnetic resonance spectroscopy, it has become possible to detect this dynamic behavior within Skp." Transporting the membrane protein in such a changing state does not require energy and allows for its rapid ... Erratic proteins: New insights into a transport mechanism - Phys.Org More...	nmrlearner	Online News	0	09-30-2013 03:48 PM
[NMR images] simpler circuit was created for the final stage receiver using ... http://www.conspiracyoflight.com/NMR/NMR9.jpg www.conspiracyoflight.com 18/06/2013 7:23:35 AM GMT simpler circuit was created for the final stage receiver using ... More...	nmrlearner	NMR pictures	0	06-18-2013 07:21 AM
A trick to fold proteins more quickly - PhysOrg.com - Phys.Org <img alt="" height="1" width="1" /> A trick to fold proteins more quickly - PhysOrg.com Phys.Org "We exploit the experimental data obtained observing the proteins through nuclear magnetic resonance, and use them to create restraints to be applied to the model", explained Laio, who has coordinated the research published in Proceedings of the ... A trick to fold proteins more quickly - PhysOrg.com - Phys.Org More...	nmrlearner	Online News	0	05-08-2013 02:49 PM

« Previous Thread | Next Thread »

Thread Tools	Search this Thread
Show Printable Version Email this Page	Search this Thread: Advanced Search
Display Modes	Rate This Thread
Linear Mode Switch to Hybrid Mode Switch to Threaded Mode	Rate This Thread:

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off