Protein dynamics play major role in directed evolution's success - Chemical & Engineering News

		BioNMR > NMR community > Online News
Protein dynamics play major role in directed evolution's success - Chemical & Engineering News

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-23-2020, 07:11 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,175

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Protein dynamics play major role in directed evolution's success - Chemical & Engineering News

Protein dynamics play major role in directed evolution's success Chemical & Engineering News
Protein dynamics play major role in directed evolution's success - Chemical & Engineering News
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Structure of SARS-CoV-2 envelope protein solved by NMR - Chemical & Engineering News Structure of SARS-CoV-2 envelope protein solved by NMR - Chemical & Engineering News Structure of SARS-CoV-2 envelope protein solved by NMR Chemical & Engineering News Read here	nmrlearner	Online News	0	11-22-2020 04:05 AM
UNH study finds how gender-biased protein may play role in autism - News-Medical.net UNH study finds how gender-biased protein may play role in autism - News-Medical.net UNH study finds how gender-biased protein may play role in autism News-Medical.netResearchers at the University of New Hampshire are one step closer to helping answer the question of why autism is four times more common in boys than in ... Read here	nmrlearner	Online News	0	04-17-2019 01:41 PM
Protein captures lanthanide traces - Chemical & Engineering News Protein captures lanthanide traces - Chemical & Engineering News Protein captures lanthanide traces Chemical & Engineering NewsLanthanides were once thought to have no role in biology, but that dogma was shattered when researchers discovered bacteria that rely on these elements to ... Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
Protein captures lanthanide traces - Chemical & Engineering News Protein captures lanthanide traces - Chemical & Engineering News <img alt="" height="1" width="1"> Protein captures lanthanide traces Chemical & Engineering News Joseph A. Cotruvo Jr. and colleagues at Pennsylvania State University have now discovered a protein that could help to explain how these bacteria harvest scant traces of lanthanides and incorporate them in enzymes (J. Am. Chem. Soc. 2018, DOI: 10.1021 ... Read here	nmrlearner	Online News	0	11-25-2018 06:02 AM
Structure of superlong, ice-binding protein reported - Chemical & Engineering News http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcQkxfFNLC_tf_8B3CqC2nuGRwQlppvcf4BXIpXmYe_yQRggYkFmstcgBYk_LmkAXNdl-KsSkKmX Chemical & Engineering News <img alt="" height="1" width="1"> Structure of superlong, ice-binding protein reported Chemical & Engineering News Now they have used X-ray crystallography, nuclear magnetic resonance spectroscopy, and small-angle X-ray scattering to structurally analyze the RI, RIII, and RV regions, enabling them to assemble the entire overall structure (Sci. Adv. 2017, DOI: ... Structure of superlong, ice-binding protein reported -...	nmrlearner	Online News	0	08-16-2017 08:53 AM
Protein folding: Much more intricate than we thought - Chemical & Engineering News Protein folding: Much more intricate than we thought - Chemical & Engineering News http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcR2lUbQznmJikp64yONmq-93HLAx2q0s7eusWw6aVTxD8SqPlpjnTY-svt66vvMTtugAbUWrjzO Chemical & Engineering News <img alt="" height="1" width="1"> Protein folding: Much more intricate than we thought Chemical & Engineering News In 2014, a team led by Kalodimos reported an NMR-based structure of Trigger Factor showing that it binds to an unfolded peptide in at least four spots where the peptide has stretches of six to 10 hydrophobic residues (Science, DOI:...	nmrlearner	Online News	0	07-31-2017 11:54 AM
Novel Technique Represents Major Advance in Protein Structure Research - Genetic Engineering & Biotechnology News Novel Technique Represents Major Advance in Protein Structure Research - Genetic Engineering & Biotechnology News <img alt="" height="1" width="1"> Novel Technique Represents Major Advance in Protein Structure Research Genetic Engineering & Biotechnology News Led by U. of I. chemistry professor Chad Rienstra, Ph.D., the team published its study ("Experimental protein structure verification by scoring with a single, unassigned NMR spectrum") in the journal Structure. "We've taken a process that would take ... and more » Read here	nmrlearner	Online News	0	10-16-2015 01:44 PM
Protein Interactions In Membranes - Chemical & Engineering News Protein Interactions In Membranes - Chemical & Engineering News http://nt2.ggpht.com/news/tbn/EsMJPExWlLTDnM/6.jpg Chemical & Engineering News <img alt="" height="1" width="1" /> Protein Interactions In Membranes Chemical & Engineering News When researchers use NMR to study protein-complex formation in cell-membrane mimics called micelles, they run the risk of misinterpreting shifts in the spectra. For instance, protein A and protein B might just appear to be associating because the ...	nmrlearner	Online News	0	11-29-2011 04:49 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off