Potentially life-saving protein takes shape: Ubiquitin's novel forms suggest ... - Phys.Org

		BioNMR > NMR community > Online News
Potentially life-saving protein takes shape: Ubiquitin's novel forms suggest ... - Phys.Org

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

07-02-2013, 10:20 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,187

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Potentially life-saving protein takes shape: Ubiquitin's novel forms suggest ... - Phys.Org

Potentially life-saving protein takes shape: Ubiquitin's novel forms suggest ... - Phys.Org

Potentially life-saving protein takes shape: Ubiquitin's novel forms suggest ...
Phys.Org
... protein takes shape: Ubiquitin's novel forms suggest novel functions. 46 minutes ago. A tiny protein called ubiquitin â?? so named because it is present in every cell of living things as dissimilar as hollyhocks and humans - may hold the key to ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
A Potentially Life - Saving Protein Takes Shape - Science Daily (press release) A Potentially Life - Saving Protein Takes Shape - Science Daily (press release) <img alt="" height="1" width="1" /> A Potentially Life - Saving Protein Takes Shape Science Daily (press release) July 2, 2013 â?? A tiny protein called ubiquitin -- so named because it is present in every cell of living things as dissimilar as hollyhocks and humans -- may hold the key to treatment for a variety of diseases from Parkinson's to diabetes. The protein ... and more » Read here	nmrlearner	Online News	0	07-02-2013 10:20 PM
Life-saving NMR: Septic shock Life-saving NMR: Septic shock http://www.spectroscopynow.com/common/images/thumbnails/13d5a08315c.jpgNMR spectroscopy could be used to save the lives of children with septic shock by revealing the tell-tale profile of metabolites associated with the severest cases of this condition. Read the rest at Spectroscopynow.com	nmrlearner	General	0	03-15-2013 11:17 AM
Small Angle X-Ray Scattering and the Determination of Protein Shape - Azom.com Small Angle X-Ray Scattering and the Determination of Protein Shape - Azom.com http://www.bionmr.com//nt1.ggpht.com/news/tbn/iU2tlbV3PRWsOM/6.jpg Azom.com <img alt="" height="1" width="1" /> Small Angle X-Ray Scattering and the Determination of Protein Shape Azom.com The low resolution 3D structure obtained by ab-initio methods is an important additional data to the high resolution structures obtained by protein crystallography and NMR. This article discusses the application of SAXSess mc system from Anton Paar to ... and more »	nmrlearner	Online News	0	02-20-2013 06:24 PM
3D structure of an unmodified G protein-coupled receptor in its natural habitat - Phys.Org 3D structure of an unmodified G protein-coupled receptor in its natural habitat - Phys.Org <img alt="" height="1" width="1" /> 3D structure of an unmodified G protein-coupled receptor in its natural habitat Phys.Org Using NMR spectroscopy, the team mapped the arrangement of atoms in a protein called CXCR1, which detects the inflammatory signal interleukin 8 and, through a G protein located inside the cell, triggers a cascade of events that can mobilize immune ... and more » Read here	nmrlearner	Online News	0	11-04-2012 05:53 AM
Crystal structure of a cyanobacterial protein associated with nitrogen fixation - Phys.Org Crystal structure of a cyanobacterial protein associated with nitrogen fixation - Phys.Org <img alt="" height="1" width="1" /> Crystal structure of a cyanobacterial protein associated with nitrogen fixation Phys.Org NMR and other biophysical data collected at EMSL confirmed that the biological unit of DUF269 in solution was the same as observed in the asymmetric unit of the crystal, a dimer. Further biochemical experiments are in progress to determine the ... Read here	nmrlearner	Online News	0	07-24-2012 08:28 PM
Research discovery: Near-complete set of templates for protein complexes ... - Phys.Org <img alt="" height="1" width="1" /> Research discovery: Near-complete set of templates for protein complexes ... Phys.Org Such accurate computer modeling is based on â??templateâ?? structures of proteins determined by X-ray crystallography and nuclear magnetic resonance. Until now, it was believed that many years of work were required before a practically useful set of ... Research discovery: Near-complete set of templates for protein complexes ... - Phys.Org More...	nmrlearner	Online News	0	06-08-2012 08:47 PM
[NMR tweet] Carbon nuclear magnetic resonance is driving me crazy. It takes me so long to decipher it!!! http://twitpic.com/4tmgno Carbon nuclear magnetic resonance is driving me crazy. It takes me so long to decipher it!!! http://twitpic.com/4tmgno Published by matthiaslow (Mytyres) on 2011-05-05T09:04:51Z Source: Twitter	nmrlearner	Twitter NMR	0	05-05-2011 09:17 AM
[NMR paper] Shape and dynamics of a calcium-binding protein investigated by nitrogen-15 NMR relax Shape and dynamics of a calcium-binding protein investigated by nitrogen-15 NMR relaxation. Related Articles Shape and dynamics of a calcium-binding protein investigated by nitrogen-15 NMR relaxation. Methods Mol Biol. 2002;173:285-300 Authors: Werner JM, Campbell ID, Downing AK	nmrlearner	Journal club	0	11-24-2010 08:49 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off