Newly Discovered Molecule Cuts Bacterial Proteins Short - The Biological SCENE

		BioNMR > NMR community > Online News
Newly Discovered Molecule Cuts Bacterial Proteins Short - The Biological SCENE

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-09-2013, 04:40 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,174

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Newly Discovered Molecule Cuts Bacterial Proteins Short - The Biological SCENE

Newly Discovered Molecule Cuts Bacterial Proteins Short
The Biological SCENE
With additional separations, they isolated the active compound and determined the structure using nuclear magnetic resonance spectroscopy. The compound included a collage of functional groups, but its unique feature was an orthoformate moietyâ??a trio ...

Newly Discovered Molecule Cuts Bacterial Proteins Short - The Biological SCENE
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Breast Milk Science: Toward Preemie Probiotics - The Biological SCENE http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcT8CrTSXMSCRsg4qcKRDEkhPqcSiXMGjYIxQungfzoNmT_JWjS-e38HIEISGMog3EUmv20v-P8H The Biological SCENE <img alt="" height="1" width="1" /> Breast Milk Science: Toward Preemie Probiotics The Biological SCENE In addition to Lebrilla's oligosaccharide, protein, and peptide analyses, UC Davis food science professor Carolyn M. Slupsky uses nuclear magnetic resonance spectroscopy to look at how compounds in blood and urine respond to a baby's diet, as well as ... Breast Milk Science: Toward Preemie Probiotics - The Biological SCENE	nmrlearner	Online News	0	07-09-2013 02:41 AM
Small-Molecule Binding Sites on Proteins Establishedby Paramagnetic NMR Spectroscopy Small-Molecule Binding Sites on Proteins Establishedby Paramagnetic NMR Spectroscopy Jia-Ying Guan, Peter H. J. Keizers, Wei-Min Liu, Frank Lo?hr, Simon P. Skinner, Edwin A. Heeneman, Harald Schwalbe, Marcellus Ubbink and Gregg Siegal http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja401323m/aop/images/medium/ja-2013-01323m_0009.gif Journal of the American Chemical Society DOI: 10.1021/ja401323m http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/ZukfjIRmQq8	nmrlearner	Journal club	0	04-05-2013 11:03 PM
[NMR paper] Small molecule binding sites on proteins established by paramagnetic NMR spectroscopy. Small molecule binding sites on proteins established by paramagnetic NMR spectroscopy. Related Articles Small molecule binding sites on proteins established by paramagnetic NMR spectroscopy. J Am Chem Soc. 2013 Mar 20; Authors: Guan JY, Keizers PH, Liu WM, Loehr F, Skinner SP, Heeneman EA, Schwalbe H, Ubbink M, Siegal GD Abstract Determining the three dimensional structure of a small molecule-protein complex with weak affinity can be a significant challenge. We present a paramagnetic NMR method to determine intermolecular structure...	nmrlearner	Journal club	0	03-21-2013 02:58 PM
Discovered a new regulatory mechanism of c-Src, the human protein bound to ... - HealthCanal.com Discovered a new regulatory mechanism of c-Src, the human protein bound to ... - HealthCanal.com <img alt="" height="1" width="1" /> Discovered a new regulatory mechanism of c-Src, the human protein bound to ... HealthCanal.com ... leader of the Biomolecular Nuclear Magnetic Resonance (NMR) Research Group, affiliated with the Department of Organic Chemistry of the UB, â??the discovery of a new regulatory mechanism in such a relevant and extensively studied protein proves the ... Read here	nmrlearner	Online News	0	02-20-2013 05:54 AM
Recombinant proteins incorporating short non-native extensions may display increased aggregation propensity as detected by high resolution NMR spectroscopy Recombinant proteins incorporating short non-native extensions may display increased aggregation propensity as detected by high resolution NMR spectroscopy 26 October 2012 Publication year: 2012 Source:Biochemical and Biophysical Research Communications, Volume 427, Issue 3</br> </br> The use of a recombinant protein to investigate the function of the native molecule requires that the former be obtained with the same amino acid sequence as the template. However, in many cases few additional residues are artificially introduced for cloning or purification purposes,...	nmrlearner	Journal club	0	02-03-2013 10:13 AM
Proteins Made To Order - The Biological SCENE Proteins Made To Order - The Biological SCENE http://www.bionmr.com//nt3.ggpht.com/news/tbn/F-bqGsEbXXBhFM/6.jpg The Biological SCENE <img alt="" height="1" width="1" /> Proteins Made To Order The Biological SCENE Each red dot in the energy landscape is the lowest energy structure of the amino acid sequence of a designed protein as predicted by a Rosetta@home volunteer. The actual structure obtained with NMR (blue) closely matches the intended design structure ...	nmrlearner	Online News	0	11-12-2012 05:43 PM
‘q-titration’ of long-chain and short-chain lipids differentiates between structured and mobile residues of membrane proteins studied in bicelles by solution NMR spectroscopy ‘q-titration’ of long-chain and short-chain lipids differentiates between structured and mobile residues of membrane proteins studied in bicelles by solution NMR spectroscopy Publication year: 2011 Source: Journal of Magnetic Resonance, Available online 25 October 2011</br> Woo SungSon, Sang HoPark, Henry J.Nothnagel, George J.Lu, Yan*Wang, ...</br> ‘q-titration’ refers to the systematic comparison of signal intensities in solution NMR spectra of uniformlyN labeled membrane proteins solubilized in micelles and isotropic bicelles as a function of the molar ratios (q) of the...	nmrlearner	Journal club	0	10-26-2011 11:25 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off