ETH Zurich: Computer algorithms could help in development of artificial proteins - Science Business

		BioNMR > NMR community > Online News
ETH Zurich: Computer algorithms could help in development of artificial proteins - Science Business

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-26-2021, 10:50 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,184

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

ETH Zurich: Computer algorithms could help in development of artificial proteins - Science Business

ETH Zurich: Computer algorithms could help in development of artificial proteins Science Business
ETH Zurich: Computer algorithms could help in development of artificial proteins - Science Business
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Has Artificial Intelligence 'Solved' Biology's Protein-Folding Problem? - The Wire Science Has Artificial Intelligence 'Solved' Biology's Protein-Folding Problem? - The Wire Science Has Artificial Intelligence 'Solved' Biology's Protein-Folding Problem? The Wire Science Read here	nmrlearner	Online News	0	12-29-2020 04:50 AM
Protein Trends & Technologies Market Division, New Business Opportunities, Growth Rate, Development Trend and Feasibility Studies 2026 - Cheshire Media Protein Trends & Technologies Market Division, New Business Opportunities, Growth Rate, Development Trend and Feasibility Studies 2026 Cheshire Media Protein Trends & Technologies Market Division, New Business Opportunities, Growth Rate, Development Trend and Feasibility Studies 2026 - Cheshire Media More...	nmrlearner	Online News	0	11-29-2020 08:12 AM
Modified deep-learning algorithms unveil features of shape-shifting proteins - Phys.org Modified deep-learning algorithms unveil features of shape-shifting proteins - Phys.org Modified deep-learning algorithms unveil features of shape-shifting proteins Phys.orgUsing artificial neural networks designed to emulate the inner workings of the human brain, deep-learning algorithms deftly peruse and analyze large quantities ... Read here	nmrlearner	Online News	0	05-09-2019 11:40 PM
Arachnid Rapunzel: Researchers spin spider silk proteins into artificial silk - (e) Science News Arachnid Rapunzel: Researchers spin spider silk proteins into artificial silk - (e) Science News http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcRr_N95y_3k4uVB81DfIFgrFibP4sVEYf3t9tZgG9j9dVXLKH5CbficPDLAVrQhoOLzuZFxsKhI (e) Science News <img alt="" height="1" width="1"> Arachnid Rapunzel: Researchers spin spider silk proteins into artificial silk (e) Science News Jan Rainey's group at Dalhousie University used nuclear magnetic resonance (NMR) spectroscopy to analyze the structure of AcSp1's repeat sequence at very high resolution, producing one of the first spider silk repeat...	nmrlearner	Online News	0	02-12-2015 06:10 AM
Scientists move toward rational design of artificial proteins - R & D Magazine Scientists move toward rational design of artificial proteins - R & D Magazine <img alt="" height="1" width="1" /> Scientists move toward rational design of artificial proteins R & D Magazine Less vulnerable to chemical or metabolic breakdown than proteins, peptoids are promising for diagnostics, pharmaceuticals, and as a platform to build bioinspired nanomaterials, as scientists can build and manipulate peptoids with great precision. But ... Read here	nmrlearner	Online News	0	08-23-2012 03:46 AM
[NMR tweet] Maven Semantic: Nuclear Magnetic Resonance Database: The new database is now available to marketing, business development, competitor... Maven Semantic: Nuclear Magnetic Resonance Database: The new database is now available to marketing, business development, competitor... Published by Cheryl_Gates (Cheryl Gates) on 2011-01-18T14:33:38Z Source: Twitter	nmrlearner	Twitter NMR	0	01-18-2011 03:01 PM
[NMR paper] Sequential assignment of 2D-NMR spectra of proteins using genetic algorithms. Sequential assignment of 2D-NMR spectra of proteins using genetic algorithms. Related Articles Sequential assignment of 2D-NMR spectra of proteins using genetic algorithms. J Chem Inf Comput Sci. 1993 Mar-Apr;33(2):245-51 Authors: Wehrens R, Lucasius C, Buydens L, Kateman G The application of genetic algorithms to the problem of the sequential assignment of two-dimensional protein NMR spectra is discussed. The problem is heavily underconstrained since in most cases more patterns are available than amino acid positions, and uncertainties may...	nmrlearner	Journal club	0	08-21-2010 11:53 PM
[NMR paper] Computer-assisted assignment of 2D 1H NMR spectra of proteins: basic algorithms and a Computer-assisted assignment of 2D 1H NMR spectra of proteins: basic algorithms and application to phoratoxin B. Related Articles Computer-assisted assignment of 2D 1H NMR spectra of proteins: basic algorithms and application to phoratoxin B. J Biomol NMR. 1991 May;1(1):23-47 Authors: Kleywegt GJ, Boelens R, Cox M, Llinás M, Kaptein R A suite of computer programs (CLAIRE) is described which can be of assistance in the process of assigning 2D 1H NMR spectra of proteins. The programs embody a software implementation of the sequential assignment...	nmrlearner	Journal club	0	08-21-2010 11:16 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off