A digital approach to proteins and cancer - Science Daily

		BioNMR > NMR community > Online News
A digital approach to proteins and cancer - Science Daily

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-29-2020, 09:52 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,174

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

A digital approach to proteins and cancer - Science Daily

A digital approach to proteins and cancer - Science Daily

A digital approach to proteins and cancer Science Daily Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Revealing the role of the mysterious small proteins: Classifying proteins with less than 100 amino acids - Science Daily Revealing the role of the mysterious small proteins: Classifying proteins with less than 100 amino acids - Science Daily Revealing the role of the mysterious small proteins: Classifying proteins with less than 100 amino acids Science DailyInvestigators develop a technique to identify and classify proteins with less than 100 amino acids. These types of proteins account for only 16 percent of a ... Read here	nmrlearner	Online News	0	03-25-2019 08:37 PM
How antifreeze proteins stop ice cold - Science Daily How antifreeze proteins stop ice cold - Science Daily How antifreeze proteins stop ice cold Science DailyThe existence of antifreeze proteins (AFPs) has been known for decades, but the mechanisms governing this unique survival technique have proven difficult to ... Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
Enzyme's movement may be key to new cancer drugs - Science Daily <img alt="" height="1" width="1"> Enzyme's movement may be key to new cancer drugs Science Daily To watch a kinase called mitogen-activated protein kinase (MAPK) p38 in action, the researchers used nuclear magnetic resonance (NMR) spectroscopy. All necessary molecules had to bind to p38 for the enzyme to become active. Only then could the ... Enzyme's movement may be key to new cancer drugs - Science Daily More...	nmrlearner	Online News	0	05-17-2018 03:46 AM
Antarctic bacterium has one of the biggest proteins ever found - Science Daily <img alt="" height="1" width="1"> Antarctic bacterium has one of the biggest proteins ever found Science Daily "Apart from x-ray diffraction, we also used x-ray scattering, a specialist field of ours in Eindhoven, and nuclear magnetic resonance." Then they put all the pieces together like a jigsaw puzzle. Symbiosis. They discovered that each piece of the ... Antarctic bacterium has one of the biggest proteins ever found - Science Daily More...	nmrlearner	Online News	0	08-11-2017 08:52 PM
Novel protein inhibitors engineered as alternative approach to potentially treat cancer - Science Daily http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcTArx6QDkt_eys4vsBX6AKLFWNV35-5QEwADhFv6KBkEJhgPFqbiubXiOnuko403fIt--H0YDcs Science Daily <img alt="" height="1" width="1"> Novel protein inhibitors engineered as alternative approach to potentially treat cancer Science Daily Superimposed ribbon structures of N-TIMP-1 extracted from 3D structures of complexes with different MMPs determined by X-ray crystallography, and two structures of the free protein in solution determined by nuclear magnetic resonance spectroscopy. Novel protein inhibitors engineered as alternative...	nmrlearner	Online News	0	06-07-2016 02:39 PM
Study reveals insights into protein linked to cancer, Alzheimer's disease - Science Daily Study reveals insights into protein linked to cancer, Alzheimer's disease - Science Daily <img alt="" height="1" width="1"> Study reveals insights into protein linked to cancer, Alzheimer's disease Science Daily NMR-based model for Pin1 (â??Aâ?? and â??Bâ?? globular domains), and its interaction with its â??disorderedâ?? protein targets pertinent to cancer and Alzheimer's disease (green). The Pin1 â??Aâ?? and â??Bâ?? domains specialize in peptidyl-prolyl isomerase activity and ... Read here	nmrlearner	Online News	0	06-05-2016 02:18 AM
Scientists digitally mimic evolution to create novel proteins - Science Daily Scientists digitally mimic evolution to create novel proteins - Science Daily http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcQ1S_OtAQ0y_nQGuBHoRVhIV31DmDDXxvVyA3crWn5rL5gEJb8YPooPLiqgkNOODGyXyvhcDREW Science Daily <img alt="" height="1" width="1"> Scientists digitally mimic evolution to create novel proteins Science Daily Jacobs and colleagues took pictures of these proteins using x-ray crystallography and NMR, and found that the proteins contained all the unique structural varieties they had designed on the computer. "We were excited that some had clefts or grooves on ... ...	nmrlearner	Online News	0	05-11-2016 06:13 AM
Proteins' Passing Phases Revealed - Science Daily (press release) <img alt="" height="1" width="1" /> Proteins' Passing Phases Revealed Science Daily (press release) X-ray crystallography and, more recently, nuclear magnetic resonance spectroscopy are the most common tools to see how the amino acids in a protein chain arrange themselves based on their attractive and repulsive energies, but they say nothing about ... and more » Proteins' Passing Phases Revealed - Science Daily (press release) More...	nmrlearner	Online News	0	12-06-2013 09:08 AM

« Previous Thread | Next Thread »

Thread Tools	Search this Thread
Show Printable Version Email this Page	Search this Thread: Advanced Search
Display Modes	Rate This Thread
Linear Mode Switch to Hybrid Mode Switch to Threaded Mode	Rate This Thread:

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off