Diamonds Could Reveal Complex Protein Structures without the Need for ... - Azom.com

		BioNMR > NMR community > Online News
Diamonds Could Reveal Complex Protein Structures without the Need for ... - Azom.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-11-2015, 12:26 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,173

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Diamonds Could Reveal Complex Protein Structures without the Need for ... - Azom.com

Azom.com

Diamonds Could Reveal Complex Protein Structures without the Need for ...
Azom.com
Nuclear magnetic resonance, transmission electron microscopy and X-ray crystallography are widely used techniques to reveal the molecular structure of proteins. The need for a large sample volume is an issue for all of these techniques, thus limiting ...
Diamonds Could Help Bring Proteins into Focus, Says StudyScicasts (press release) (registration) (blog)

all 2 news articles »

Diamonds Could Reveal Complex Protein Structures without the Need for ... - Azom.com
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Diamonds defects reveal complex protein structures - RedOrbit http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcQGVQ67XuI2c0aczST8T1IFRHv-wHGfcIIsi5S9kQ5As_-EqvK7N1GkTsGWGxIQfwGWoPPgAXM RedOrbit <img alt="" height="1" width="1"> Diamonds defects reveal complex protein structures RedOrbit Efforts to decode the molecular structure of proteins have mostly used X-ray crystallography, transmission electron microscopy, or nuclear magnetic resonance. But all of these methods require large sample volumes â?? for example, X-ray diffraction ... Diamonds defects reveal complex protein structures - RedOrbit	nmrlearner	Online News	0	02-08-2015 01:21 AM
Using CEM Process Control Systems for Moisture, Fat and Protein Analysis in ... - Azom.com Using CEM Process Control Systems for Moisture, Fat and Protein Analysis in ... - Azom.com http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcTss7wO5oxnTSZZmUl-Ar6LVL2ybAD0IymnVqJ4jkgzudHCCMjQORIiapM0Fg3p60HNec2u3RdN Azom.com <img alt="" height="1" width="1" /> Using CEM Process Control Systems for Moisture, Fat and Protein Analysis in ... Azom.com It combines a sophisticated NMR magnet for fat analysis with the SMART Turbo Microwave for solid and moisture analysis of in-process products, incoming raw meat, and finished goods. More precise than FTNIR and NIR systems, the MEAT...	nmrlearner	Online News	0	10-21-2014 03:56 AM
Analysis of Moisture, Fat and Protein in Cheese Products - Azom.com Analysis of Moisture, Fat and Protein in Cheese Products - Azom.com <img alt="" height="1" width="1" /> Analysis of Moisture, Fat and Protein in Cheese Products Azom.com The SMART Trac II from CEM enables the testing of moisture and fat using TD-NMR coupled with microwave drying, which has been established as the most accurate rapid method available. The study of the entire sample on a molecular level not just the ... and more » Read here	nmrlearner	Online News	0	03-07-2014 05:41 AM
Understanding Protein Crystallization Growth at the University of ... - Azom.com Understanding Protein Crystallization Growth at the University of ... - Azom.com http://www.bionmr.com//nt2.ggpht.com/news/tbn/YvGbSkpEZpDV7M/6.jpg Azom.com <img alt="" height="1" width="1" /> Understanding Protein Crystallization Growth at the University of ... Azom.com Understanding Protein Crystallization Growth at the University of Leeds using a ... Mass Spectrometers · Nuclear Magnetic Resonance Spectroscopy (NMR) ...	nmrlearner	Online News	0	06-28-2012 07:54 AM
Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold. Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold. Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold. J Struct Funct Genomics. 2010 Dec 14; Authors: Mani R, Vorobiev S, Swapna GV, Neely H, Janjua H, Ciccosanti C, Xiao R, Acton TB, Everett JK, Hunt J, Montelione GT The conserved Lipoprotein-17 domain of membrane-associated protein Q9PRA0_UREPA from Ureaplasma parvum was selected for structure determination by the Northeast Structural...	nmrlearner	Journal club	0	12-15-2010 12:03 PM
[NMR paper] 13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of 13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein. Related Articles 13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein. J Mol Biol. 2005 Jun 17;349(4):699-715 Authors: Shajani Z, Varani G The widespread importance of induced fit and order-disorder transition in RNA recognition by proteins and small molecules makes it imperative that RNA motional properties are...	nmrlearner	Journal club	0	11-25-2010 08:21 PM
[NMR paper] NMR structures reveal how oxidation inactivates thrombomodulin. NMR structures reveal how oxidation inactivates thrombomodulin. Related Articles NMR structures reveal how oxidation inactivates thrombomodulin. Biochemistry. 2003 Oct 21;42(41):11932-42 Authors: Wood MJ, Becvar LA, Prieto JH, Melacini G, Komives EA Oxidation of Met 388, one of the three linker residues connecting the fourth and fifth EGF-like domains of thrombomodulin (TM), is deleterious for TM activity. An NMR structure of the smallest active fragment of TM (TMEGF45) and a crystal structure of a larger fragment (TMEGF456) bound to thrombin...	nmrlearner	Journal club	0	11-24-2010 09:16 PM
[NMR paper] NMR structures of two variants of bovine pancreatic trypsin inhibitor (BPTI) reveal u NMR structures of two variants of bovine pancreatic trypsin inhibitor (BPTI) reveal unexpected influence of mutations on protein structure and stability. Related Articles NMR structures of two variants of bovine pancreatic trypsin inhibitor (BPTI) reveal unexpected influence of mutations on protein structure and stability. J Mol Biol. 2002 Aug 23;321(4):647-58 Authors: Cierpicki T, Otlewski J Here we determined NMR solution structures of two mutants of bovine pancreatic trypsin inhibitor (BPTI) to reveal structural reasons of their decreased...	nmrlearner	Journal club	0	11-24-2010 08:58 PM

« Previous Thread | Next Thread »

Thread Tools	Search this Thread
Show Printable Version Email this Page	Search this Thread: Advanced Search
Display Modes	Rate This Thread
Linear Mode Switch to Hybrid Mode Switch to Threaded Mode	Rate This Thread:

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off