BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > Online News
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 11-03-2022, 10:18 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,174
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Binding with a 'messy' protein: how nickel becomes the lung killer - Emergency Live International

Binding with a 'messy' protein: how nickel becomes the lung killer Emergency Live International
Binding with a 'messy' protein: how nickel becomes the lung killer - Emergency Live International
More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Detection of Lung Cancer via Blood Plasma and (1)H-NMR Metabolomics: Validation by a Semi-Targeted and Quantitative Approach Using a Protein-Binding Competitor
Detection of Lung Cancer via Blood Plasma and (1)H-NMR Metabolomics: Validation by a Semi-Targeted and Quantitative Approach Using a Protein-Binding Competitor Metabolite profiling of blood plasma, by proton nuclear magnetic resonance (¹H-NMR) spectroscopy, offers great potential for early cancer diagnosis and unraveling disruptions in cancer metabolism. Despite the essential attempts to standardize pre-analytical and external conditions, such as pH or temperature, the donor-intrinsic plasma protein concentration is highly overlooked. However, this is of utmost importance, since several...
nmrlearner Journal club 0 08-27-2021 03:49 PM
[NMR paper] Insights into the Binding of Cyclic RGD Peptidomimetics to ?5?1 Integrin by using Live-Cell NMR And Computational Studies.
Insights into the Binding of Cyclic RGD Peptidomimetics to ?5?1 Integrin by using Live-Cell NMR And Computational Studies. Related Articles Insights into the Binding of Cyclic RGD Peptidomimetics to ?5?1 Integrin by using Live-Cell NMR And Computational Studies. ChemistryOpen. 2017 Feb;6(1):128-136 Authors: Guzzetti I, Civera M, Vasile F, Arosio D, Tringali C, Piarulli U, Gennari C, Pignataro L, Belvisi L, Potenza D Abstract The interaction of a small library of cyclic DKP-RGD peptidomimetics with ?5?1 integrin has been...
nmrlearner Journal club 0 02-09-2017 12:19 PM
Elucidation of Lipid Binding Sites on Lung SurfactantProtein A Using X-ray Crystallography, Mutagenesis, and MolecularDynamics Simulations
Elucidation of Lipid Binding Sites on Lung SurfactantProtein A Using X-ray Crystallography, Mutagenesis, and MolecularDynamics Simulations http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00048/20160620/images/medium/bi-2016-00048k_0010.gif Biochemistry DOI: 10.1021/acs.biochem.6b00048 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/Nn6Ip0uz_qA More...
nmrlearner Journal club 0 06-22-2016 06:54 AM
IISc's killer discovery to fight multiple drug resistant TB bacteria - Bangalore Mirror
<img alt="" height="1" width="1" /> IISc's killer discovery to fight multiple drug resistant TB bacteria Bangalore Mirror While the Physics department helped with crystallography of proteins and computational biology, the department of Biophysics helped with nuclear magnetic resonance (NMR) spectroscopy which found that the SD1 molecule binds to the protein. Biology ... IISc's killer discovery to fight multiple drug resistant TB bacteria - Bangalore Mirror More...
nmrlearner Online News 0 06-15-2014 04:45 AM
[Question from NMRWiki Q&A forum] Avance III 400 NMR lift unresponsive... emergency air lift activiated
Avance III 400 NMR lift unresponsive... emergency air lift activiated Hi, I am unable to activate our lift on our avance III 400 NMR from BruKer The message is emergency air lift activated. Both the inject and eject commands give this error. And I am unable to hear of air flow through the lift or any other mechanism when a lift is attempted. We could still lock on and shim to the chloroform peak. I've gone through a couple of trouble shooting pathways but so far I'm unsuccessful and getting our lift to work and shutting off the emergency air flow. Does any one have any suggestions? ...
nmrlearner News from other NMR forums 0 05-25-2013 12:05 PM
[NMR paper] The zinc-binding fragment of HypA from Helicobacter pylori: a tempting site also for nickel ions.
The zinc-binding fragment of HypA from Helicobacter pylori: a tempting site also for nickel ions. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.rsc.org-images-entities-char_z_RSClogo.gif Related Articles The zinc-binding fragment of HypA from Helicobacter pylori: a tempting site also for nickel ions. Dalton Trans. 2013 Jan 21; Authors: Rowinska-Zyrek M, Potocki S, Witkowska D, Valensin D, Kozlowski H Abstract HypA, a nickel accessory protein from H. pylori, binds a zinc ion in it's structural site, a loop with two conserved...
nmrlearner Journal club 0 02-03-2013 10:19 AM
[NMR paper] What NMR can tell us about where lung surfactant proteins live.
What NMR can tell us about where lung surfactant proteins live. Related Articles What NMR can tell us about where lung surfactant proteins live. Biochem Soc Trans. 1997 Aug;25(3):1103-7 Authors: Morrow MR, Taneva S, Dico AS, Hancock J, Keough KM 2H-NMR is beginning to provide some insights into the way in which the hydrophobic surfactant proteins SP-B and SP-C interact with phospholipid bilayers in multilamellar structures. Both proteins have a significant effect on slow bilayer motions. In many ways, the effect of SP-C on the surrounding...
nmrlearner Journal club 0 08-22-2010 05:08 PM
[NMR paper] Characterization of the solution properties of Pichia farinosa killer toxin using PGS
Characterization of the solution properties of Pichia farinosa killer toxin using PGSE NMR diffusion measurements. Characterization of the solution properties of Pichia farinosa killer toxin using PGSE NMR diffusion measurements. J Biomol NMR. 1999 Feb;13(2):113-7 Authors: Price WS, Tsuchiya F, Suzuki C, Arata Y The solution behaviour with respect to pH and NaCl concentration of the tertiary structure and propensity for aggregation of salt- mediated killer toxin (SMKT) from Pichia farinosa was examined using pulsed-gradient spin-echo NMR...
nmrlearner Journal club 0 08-21-2010 04:03 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 10:10 PM.


Map