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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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  #1  
Unread 06-28-2006, 03:49 AM
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I am trying to install NMRViewJava on my Fedora Core 5 laptop and was wondering if anyone has had problems with the izpack software. The installer opens and then stalls halfway though the process both in su and normal modes. Thanks for the help in advance.
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  #2  
Unread 06-30-2006, 02:55 AM
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So if anyone is having this same problem I figured out why. The package of java that comes with FC5 doesnt work with the izpack installer. It freezes up. To run it, you need to have Sun's java. Then you must tell your computer to use the one that works and not the one that doesn't . You can find the directions for doing that at:
http://stanton-finley.net/fedora_co...notes.html#Java
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Unread 07-05-2006, 04:20 AM
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Quote:
Originally posted by R2-D2@Jun 29 2006, 07:55 PM
So if anyone is having this same problem I figured out why. The package of java that comes with FC5 doesnt work with the izpack installer. It freezes up. To run it, you need to have Sun's java. Then you must tell your computer to use the one that works and not the one that doesn't . You can find the directions for doing that at:
http://stanton-finley.net/fedora_co...notes.html#Java
[snapback]172[/snapback]

Thanks R2-D2 for posting the solution!

I wonder what Linux distribution is the most NMR/Sci.software friendly ( a bit out of topic here ). I had a lot of problems with Fortran of Suse 10.1, could not make the latest Gromacs 3.3 working with both Suse 10.1 and Fedora Core 5. I wonder if there is a Linux distribution that takes in account the requirements (or imperfections?) of the academic software or if the only way is to spend time learning how to built your own Linux distribution (with Gentoo?).
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