BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Software > NMR software
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 04-01-2010, 01:33 PM
Junior Member
 
Join Date: Apr 2010
Posts: 1
Points: 22, Level: 1
Points: 22, Level: 1 Points: 22, Level: 1 Points: 22, Level: 1
Level up: 43%, 28 Points needed
Level up: 43% Level up: 43% Level up: 43%
Activity: 0%
Activity: 0% Activity: 0% Activity: 0%
NMR Credits: 0
NMR Points: 22
Downloads: 0
Uploads: 0
Question MatNMR exporting data problem

Hi all, I'm trying to extract the data (Bruker TopSpin) into excel or origin. I don't have access to the NMR machine right now to use its interface software. So I am using MatNMR.
I am able to load the FID (1D) then do FT and PHASE. How can I have the data of the final spectrum screen, so that I can draw it by excel or origin.
Is there any way to do this?

Thanks in advance.
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[Question from NMRWiki Q&A forum] exporting part of data to excel, origin
exporting part of data to excel, origin Hi,i'm new in TopSpin and i am blocked by a simple (i thinks) problem.I have a 1D specrtrum and i would like to export it to excel or origin but my spectrum have a small S/N so there is to much point --> i want this spectrum with less point but without smoothing (if it's possible).In other word, how can i do to tell TopSpin "get the spectrum but only every 10 points (or X points)" ? Thank you in advance for those who will have the kindness to answer. Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 06-29-2011 04:51 PM
[NMRwiki tweet] nmrwiki: How to solve VNMRJ "No data in data file" problem? #nmr @Agilenthttp://qa.nmrwiki.org/question/220/vnmrj-no-data-in-data-file
nmrwiki: How to solve VNMRJ "No data in data file" problem? #nmr @Agilenthttp://qa.nmrwiki.org/question/220/vnmrj-no-data-in-data-file nmrwiki: How to solve VNMRJ "No data in data file" problem? #nmr @Agilenthttp://qa.nmrwiki.org/question/220/vnmrj-no-data-in-data-file Source: NMRWiki tweets
nmrlearner Twitter NMR 0 01-18-2011 02:44 AM
[Question from NMRWiki Q&A forum] Exporting integral data for use in calculations
Exporting integral data for use in calculations Hello people, For my internship I am attempting to fully automate monomer composition analysis on Bruker TOPSPIN 2.0 using visual basic and macro's. It's almost fully functional but I've come across the following problem: I want to use the integral data of a spectrum in calculations (i.e. export them to an excel template) but so far I've found no way of exporting integral data without using the mouse (I can make visual basic simulate mouse clicks, but it's not a method I like using since it makes the program very prone to failure or...
nmrlearner News from other NMR forums 0 11-22-2010 07:08 PM
[Question from NMRWiki Q&A forum] T1 Recovery Law with matNMR
T1 Recovery Law with matNMR Hi everybody,I can't figure out how to do this in matNMR: I've 32 echoes with different tao separating the pi/2 impulses. This 32 measurements shows an increasing peak which reach saturation. I'd like to extract the value of T1 from my recovery law but I can't understand how to use the T1 fit option with this measurements. ThanksPietro
nmrlearner News from other NMR forums 0 11-18-2010 06:16 PM
[Question from NMRWiki Q&A forum] MatNMR for a 2D Spectrum
MatNMR for a 2D Spectrum Hi, Does anyone have experience using MatNMR to produce a 2D spectrum? Or know of any examples? I'm trying to follow the instructions in the documentation: http://matnmr.sourceforge.net/manual/Processing.html#Intro for the sample data, but there are a few things I can't get to work. I use FT from the 2D menu which seems to take the Fourier transform along the TD2 direction. In the documentation is says to then take the Fourier transform along the TD1 direction, but when I use FT it seems to take it along the TD2 direction again.
nmrlearner News from other NMR forums 0 10-28-2010 09:02 AM
Spinworks and MatNMR Inconsistencies
Hello, I'm pretty new to NMR, and am just trying to do some simple data processing with a 1D ethanol spectrum I got from a Bruker spectrometer. I opened it in Spinworks and it appears to be normal, when I take the Fourier transform the spectrum is what I expected. I wanted to process this in Matlab however, so I used MatNMR to load the FID into Matlab. It seems though, that a lot of the data is for negative time values. When I take the Fourier transform it looks quite different and is considerably more noisy. Given that the data is the same, is there something that spinworks does...
jeffery NMR Questions and Answers 1 10-17-2010 10:09 PM
[Question from NMRWiki Q&A forum] Problem reading and transforming vendor data using C++/Qt
Problem reading and transforming vendor data using C++/Qt Hi, I am a German chemistry Bachelor student (beginning my Master studies in October) and as a spare-time hobby I would like to write an NMR processing program. I would like to release it as free open source software (GPL) written in C++ with a Qt frontend, so that it is platform independent. As a starting point for writing the libraries to read and transform the vendor data (currently only Bruker) I used the SpinWorks libraries released by Dr Marat (many thanks to him): ...
nmrlearner News from other NMR forums 0 08-22-2010 02:30 AM
No spontaneous blindness with matNMR anymore
matNMR, a good program for analysis of 1D and 2D spectra, has now a new color scheme (to address "the spontaneous blindness" issue) as well as many bug fixes and functionality improvements. The latest version of matNMR was released on May 5th, 2005. Read introductory information about matNMR from its website below. MatNMR is more than a static program that can be used only for processing data. It offers a wide variety of commonly used processing techniques for 1D and 2D spectra and combines these with the powerful graphical and numerical possibilities of MATLAB. Basically the concept...
nmrlearner NMR software 0 05-20-2005 05:52 AM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2017, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 05:44 AM.


Map