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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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  #1  
Unread 08-07-2006, 01:07 AM
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Default Answered:

Can anyone suggest me a most commonly used and worthful software for automated backbone assignment of triple labeled proteins.

Thanks.
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Best Answer - Posted by nmrlearner
I have not tried it myself but many people, whom I had a chance to ask this question, recommended MARS.


Quote:
Originally posted by sarun@Aug 6 2006, 06:07 PM
Can anyone suggest me a most commonly used and worthful software for automated backbone assignment of triple labeled proteins.

Thanks.
[snapback]179[/snapback]

  #2  
Unread 08-08-2006, 04:49 AM
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Default

I have not tried it myself but many people, whom I had a chance to ask this question, recommended MARS.


Quote:
Originally posted by sarun@Aug 6 2006, 06:07 PM
Can anyone suggest me a most commonly used and worthful software for automated backbone assignment of triple labeled proteins.

Thanks.
[snapback]179[/snapback]
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  #3  
Unread 03-30-2007, 03:21 PM
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Default Rdc

Hi!
I wanted to know about using PALES for measuring the dipolar couplings
I have the program on a Linux SuSe , I do not have C' Compiler or fortran. are they require to get the PALES working.
When i try, it just stops before giving the dipoar coupling , and reports zero DC.

Cheers!
Prem Prakash Pathak
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