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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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The following NMR pulse sequences for biological macromolecules are available on the website of the Danish Instrument Center as of 3/15/05:
  • Coupling Constants in Proteins
    - 2D S3CT for measurement of one bond coupling constants (J & RDC) - Varian, Bruker
  • TROSY experiments
    - clean TROSY, 15N-1H correlation, gradient version, water flip back, optional t2 decoupling - Varian, Bruker
    - constant-time S3CT TROSY, 13 C-1H correlation, gradient version - Varian, Bruker
    - (H)CCH TROSY, 3D TROSY-type HCCH correlation with diagonal peak suppression - Varian
    - TROSY-Type NOESY, 2D NOESY with amide diagonal peak suppression - Varian
    - TROSY-NOESY, 3D version with amide diagonal peak suppression - Varian, Bruker
    - HNCA, 3D sequential HNCA for Protein Backbone Assignment - Varian, Bruker
    - HNCACB, 3D sequential HNCACB for Protein Backbone Assignment - Varian
  • J Coupling Constants across Hydrogen Bonds
    - 3D S3(HN) TROSY hHNCO pulse sequence for measurement of 2hJ(HN,CO) and 3hJ(N,CO) - Varian
    - 3D C E.COSY TROSY hHNCO pulse sequence for measurement of 3hJ(HN,C) - Varian
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