NMR images HN-N Bond Vector Orientation Surfaces for Two Proteins are Distinct ...

		BioNMR > NMR community > NMR pictures
[NMR images] HN-N Bond Vector Orientation Surfaces for Two Proteins are Distinct ...

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

06-11-2014, 06:46 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,184

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

HN-N Bond Vector Orientation Surfaces for Two Proteins are Distinct ...

11/06/2014 6:46:13 AM GMT
HN-N Bond Vector Orientation Surfaces for Two Proteins are Distinct ...
More...

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR images] Ubiquitin: HN-N Bond Vector Orientations are Not Random or Uniform http://www.nmrscience.com/images/hnOrient3.jpg 31/05/2014 1:57:50 PM GMT Ubiquitin: HN-N Bond Vector Orientations are Not Random or Uniform More...	nmrlearner	NMR pictures	0	05-31-2014 01:57 PM
Uncovering symmetry-breaking vector and reliability order for assigning secondary structures of proteins from atomic NMR chemical shifts in amino acids Uncovering symmetry-breaking vector and reliability order for assigning secondary structures of proteins from atomic NMR chemical shifts in amino acids Abstract Unravelling the complex correlation between chemical shifts of 13 C Î±, 13 C Î², 13 Câ?², 1 H Î±, 15 N, 1 H N atoms in amino acids of proteins from NMR experiment and local structural environments of amino acids facilitates the assignment of secondary structures of proteins. This is an important impetus for both determining the three-dimensional structure and understanding the biological function of proteins. The previous...	nmrlearner	Journal club	0	11-14-2011 08:45 AM
Improved accuracy in measuring one-bond and two-bond 15N,13CÎ± coupling constants in proteins by double-inphase/antiphase (DIPAP) spectroscopy Improved accuracy in measuring one-bond and two-bond 15N,13CÎ± coupling constants in proteins by double-inphase/antiphase (DIPAP) spectroscopy Abstract An extension to HN(CO-Î±/Î²-N,CÎ±-J)-TROSY (Permi and Annila in J Biomol NMR 16:221â??227, 2000) is proposed that permits the simultaneous determination of the four coupling constants 1 J Nâ?²(i)CÎ±(i), 2 J HN(i)CÎ±(i), 2 J CÎ±(iâ??1)Nâ?²(i), and 3 J CÎ±(iâ??1)HN(i) in 15N,13C-labeled proteins. Contrasting the original scheme, in which two separate subspectra exhibit the 2 J CÎ±Nâ?² coupling as inphase and antiphase splitting (IPAP), we...	nmrlearner	Journal club	0	06-10-2011 01:41 AM
Impact of (15)N R(2)/R(1) Relaxation Restraints on Molecular Size, Shape, and Bond Vector Orientation for NMR Protein Structure Determination with Sparse Distance Restraints. Impact of (15)N R(2)/R(1) Relaxation Restraints on Molecular Size, Shape, and Bond Vector Orientation for NMR Protein Structure Determination with Sparse Distance Restraints. Impact of (15)N R(2)/R(1) Relaxation Restraints on Molecular Size, Shape, and Bond Vector Orientation for NMR Protein Structure Determination with Sparse Distance Restraints. J Am Chem Soc. 2011 Apr 4; Authors: Ryabov Y, Schwieters CD, Clore GM (15)N R(2)/R(1) relaxation data contain information on molecular shape and size as well as on bond vector orientations relative to...	nmrlearner	Journal club	0	04-06-2011 10:54 AM
Impact of 15N R2/R1 Relaxation Restraints on Molecular Size, Shape, and Bond Vector Orientation for NMR Protein Structure Determination with Sparse Distance Restraints Impact of 15N R2/R1 Relaxation Restraints on Molecular Size, Shape, and Bond Vector Orientation for NMR Protein Structure Determination with Sparse Distance Restraints Yaroslav Ryabov, Charles D. Schwieters and G. Marius Clore http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja201020c/aop/images/medium/ja-2011-01020c_0002.gif Journal of the American Chemical Society DOI: 10.1021/ja201020c http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/3J1IyCLkQMQ	nmrlearner	Journal club	0	04-05-2011 10:37 AM
[NMR paper] Exploring surfaces and cavities in lipoxygenase and other proteins by hyperpolarized Exploring surfaces and cavities in lipoxygenase and other proteins by hyperpolarized xenon-129 NMR. Related Articles Exploring surfaces and cavities in lipoxygenase and other proteins by hyperpolarized xenon-129 NMR. J Am Chem Soc. 1999 Oct 13;121(40):9370-7 Authors: Bowers CR, Storhaug V, Webster CE, Bharatam J, Cottone A, Gianna R, Betsey K, Gaffney BJ This paper presents an exploratory study of the binding interactions of xenon with the surface of several different proteins in the solution and solid states using both conventional and...	nmrlearner	Journal club	0	11-18-2010 08:31 PM
[NMR paper] Contributions to protein entropy and heat capacity from bond vector motions measured Contributions to protein entropy and heat capacity from bond vector motions measured by NMR spin relaxation. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Contributions to protein entropy and heat capacity from bond vector motions measured by NMR spin relaxation. J Mol Biol. 1997 Oct 10;272(5):790-804 Authors: Yang D, Mok YK, Forman-Kay JD, Farrow NA, Kay LE The backbone dynamics of both folded and unfolded states of staphylococcal nuclease (SNase) and the N-terminal...	nmrlearner	Journal club	0	08-22-2010 05:08 PM
[NMR paper] Contributions to conformational entropy arising from bond vector fluctuations measure Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding. J Mol Biol. 1996 Oct 25;263(2):369-82 Authors: Yang D, Kay LE The relation between order parameters derived from NMR...	nmrlearner	Journal club	0	08-22-2010 02:20 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off