Home | Deploying and unifying the NMR e-Infrastructure in System Biology

		BioNMR > NMR community > NMR bookmarks
Home \| Deploying and unifying the NMR e-Infrastructure in System Biology

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-19-2010, 02:34 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,184

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Home | Deploying and unifying the NMR e-Infrastructure in System Biology

Home | Deploying and unifying the NMR e-Infrastructure in System Biology

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
e-NMR: Computational NMR Infrastructure in biomolecular life sciences and system biol e-NMR: Computational NMR Infrastructure in biomolecular life sciences and system biology http://i.ytimg.com/vi/r8Rfv1TrQ4s/default.jpg e-NMR: Computational NMR Infrastructure in biomolecular life sciences and system biology In order to enable the life science community to make full use of the EGEE computing resources we have developed e-infrastructure named eNMR (EU 7th FP). It deploys and integrates biomolecular NMR applications into a platform, so that EU scientists could easily access it via a standard browser interface and to use it on every step of their research process. The...	nmrlearner	NMR educational videos	0	09-02-2010 03:58 PM
[BMNRC community] e-NMR NMR computational infrastructure e-NMR NMR computational infrastructure http://www.enmr.eu/ Manuals for the e-NMR software and web-portals Go to BMNRC community to find more info about this topic.	nmrlearner	News from other NMR forums	0	09-02-2010 04:59 AM
[NMR software blog] Try this at home Try this at home Returning to the DQF-COSY of taxole, I have found this challenge: http://3.bp.blogspot.com/_ROkYShLRKqA/StjbBJosLpI/AAAAAAAAASM/xqPq-j4ViX0/s400/challenge.png I couldn't tell which kind of multiplet it was. I have extracted the section corresponding to the red line and moved it into my novel simulator. Then I have introduced 3 couplings and pushed the "Fit" button. http://2.bp.blogspot.com/_ROkYShLRKqA/StjbBbryV5I/AAAAAAAAASU/rWaTWSXX8CI/s400/solution.png That's all. The goodness of the fit is convincing. It is a doublet of doublets of doublets and the Js are: 14.7,...	nmrlearner	News from NMR blogs	0	08-21-2010 06:29 PM
CASD-NMR \| Deploying and unifying the NMR e-Infrastructure in System Biology CASD-NMR \| Deploying and unifying the NMR e-Infrastructure in System Biology Critical Assessment of Automated Structure Determination of Proteins from NMR data - "CASD-NMR is a rolling community-wide experiment involving developers of software tools / protocols for the automated calculation of protein structures from NMR data. The goal of CASD-NMR is to help advance the relevant methodology in order to reach the level of quality and reliability required for direct structure deposition in the PDB. CASD-NMR will also produce extensive data sets that will be useful to develop better methods...	nmrlearner	NMR bookmarks	0	08-19-2010 02:34 PM
eNMR Home Page eNMR Home Page More...	nmrlearner	NMR bookmarks	0	08-19-2010 02:34 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Trackbacks are Off Pingbacks are Off Refbacks are Off