GeNMR - template-based structure generation from NMR data
GeNMR website
GeNMR (GEnerate NMR structures) is a web server for template-based or ab initio generation of 3D protein structures using NOE-derived distance restraints and NMR chemical shifts. The web server produces an ensemble of PDB coordinates within a period ranging from 20 minutes to 4 hours, depending on protein size, server load, quality and type of experimental information, and selected protocol options.
References:
1. Berjanskii M, Tang P, Liang J, Cruz JA, Zhou J, Zhou Y, Bassett E, MacDonell C, Lu P, Lin G, Wishart DS. (2009)GeNMR: a web server for rapid NMR-based...
markber
NMR software
0
02-23-2012 10:21 PM
Cross-Correlations Between Low-? Nuclei in Solids Via a Common Dipolar Bath
Cross-Correlations Between Low-? Nuclei in Solids Via a Common Dipolar Bath
Publication year: 2011
Source: Journal of Magnetic Resonance, In Press, Accepted Manuscript, Available online 20 July 2011</br>
Aanatoly K., Khitrin , Jiadi, Xu , Ayyalusamy, Ramamoorthy</br>
Correlation of chemical shifts of low-? nuclei (such as 15N) is an important method for assignment of resonances in uniformly-labeled biological solids. Under static experimental conditions, an efficient mixing of low-? nuclear spin magnetization can be achieved by a thermal contact to the common reservoir of...
nmrlearner
Journal club
0
07-21-2011 10:31 PM
Error tolerant NMR backbone resonance assignment and automated structure generation.
Error tolerant NMR backbone resonance assignment and automated structure generation.
Error tolerant NMR backbone resonance assignment and automated structure generation.
J Bioinform Comput Biol. 2011 Feb;9(1):15-41
Authors: Alipanahi B, Gao X, Karakoc E, Li SC, Balbach F, Feng G, Donaldson L, Li M
Error tolerant backbone resonance assignment is the cornerstone of the NMR structure determination process. Although a variety of assignment approaches have been developed, none works sufficiently well on noisy fully automatically picked peaks to enable...
nmrlearner
Journal club
0
02-18-2011 08:07 PM
Generation of Pseudocontact Shifts in Protein NMR Spectra with a Genetically Encoded
Generation of Pseudocontact Shifts in Protein NMR Spectra with a Genetically Encoded Cobalt(II)-Binding Amino Acid.
Related Articles Generation of Pseudocontact Shifts in Protein NMR Spectra with a Genetically Encoded Cobalt(II)-Binding Amino Acid.
Angew Chem Int Ed Engl. 2010 Nov 25;
Authors: Nguyen TH, Ozawa K, Stanton-Cook M, Barrow R, Huber T, Otting G
nmrlearner
Journal club
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11-27-2010 02:45 PM
[NMR paper] The SHAPES strategy: an NMR-based approach for lead generation in drug discovery.
The SHAPES strategy: an NMR-based approach for lead generation in drug discovery.
Related Articles The SHAPES strategy: an NMR-based approach for lead generation in drug discovery.
Chem Biol. 1999 Oct;6(10):755-69
Authors: Fejzo J, Lepre CA, Peng JW, Bemis GW, Ajay , Murcko MA, Moore JM
BACKGROUND: Recently, it has been shown that nuclear magnetic resonance (NMR) may be used to identify ligands that bind to low molecular weight protein drug targets. Recognizing the utility of NMR as a very sensitive method for detecting binding, we have...
nmrlearner
Journal club
0
11-18-2010 08:31 PM
[NMR paper] NMR structure and dynamics of an RNA motif common to the spliceosome branch-point hel
NMR structure and dynamics of an RNA motif common to the spliceosome branch-point helix and the RNA-binding site for phage GA coat protein.
Related Articles NMR structure and dynamics of an RNA motif common to the spliceosome branch-point helix and the RNA-binding site for phage GA coat protein.
Biochemistry. 1998 Sep 29;37(39):13486-98
Authors: Smith JS, Nikonowicz EP
The RNA molecules that make up the spliceosome branch-point helix and the binding site for phage GA coat protein share a secondary structure motif in which two consecutive...
nmrlearner
Journal club
0
11-17-2010 11:15 PM
[Question from NMRWiki Q&A forum] T1 & T2 of common materials
T1 & T2 of common materials
Can anyone recommend a good site which lists T1 and T2 values for common materials?
Thanks.
Check if somebody has answered this question on NMRWiki QA forum
nmrlearner
News from other NMR forums
0
09-10-2010 12:58 PM
[NMR paper] NMR techniques for characterization of ligand binding: utility for lead generation an
NMR techniques for characterization of ligand binding: utility for lead generation and optimization in drug discovery.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_120x27.gif Related Articles NMR techniques for characterization of ligand binding: utility for lead generation and optimization in drug discovery.
Biopolymers. 1999;51(3):221-43
Authors: Moore JM
Over the last ten years, nmr spectroscopy has evolved into an important discipline in drug discovery....
CING Common Interface for NMR structure Generation
Linear Mode
