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NMR processing:
MDD
NMR assignment:
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Autoassign
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PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
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CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
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Protein geomtery:
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PROSESS
What-If
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PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Unread 09-23-2011, 06:01 PM
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Default Re: practicing nmrPipe

Re: practicing nmrPipe

The valpha data is primarily intended as input for multi-spectrum display tools, not so much as a demo for processing. That being said, the NMRPipe download

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[NMRpipe Yahoo group] Re: practicing nmrPipe [3 Attachments]
Re: practicing nmrPipe Try using a peak table with just a few isolated peaks, just to be sure you have everything set up correctly. If that works as expected, go back and edit your More...
NMRpipe Yahoo group news News from other NMR forums 0 02-06-2012 03:54 PM
[NMRpipe Yahoo group] Re: practicing nmrPipe [3 Attachments]
Re: practicing nmrPipe Try using a peak table with just a few isolated peaks, just to be sure you have everything set up correctly. If that works as expected, go back and edit your More...
NMRpipe Yahoo group news News from other NMR forums 0 01-12-2012 09:30 PM
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Re: practicing nmrPipe Greetings Frank, thanks a lot, I went pass the first road block. Now, after I produced the relax.master.tab file, and I run the fit.com command, the program More...
NMRpipe Yahoo group news News from other NMR forums 0 10-09-2011 06:23 PM
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NMRpipe Yahoo group news News from other NMR forums 0 10-09-2011 06:15 AM
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Re: practicing nmrPipe Dear Dr. Delaglio, Thank you very much for the useful link and quick answer. I will definitely go through the library at nanuc! Anna 2011/9/23 More...
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