BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 05-27-2011, 10:40 AM
NMRpipe Yahoo group news's Avatar
Senior Member
 
Join Date: Aug 2010
Posts: 443
NMR Credits: 0
NMR Points: 0
Downloads: 0
Uploads: 0
Default Re: How to combine 3d varian datasets?

Re: How to combine 3d varian datasets?

Many ways to do this, including zero-filling in the Z-Axis, shifting the "second half" in the Z-Axis, then adding the two results. Since the 3D data format

More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
A procedure to validate and correct the 13C chemical shift calibration of RNA datasets
A procedure to validate and correct the 13C chemical shift calibration of RNA datasets Abstract Chemical shifts reflect the structural environment of a certain nucleus and can be used to extract structural and dynamic information. Proper calibration is indispensable to extract such information from chemical shifts. Whereas a variety of procedures exist to verify the chemical shift calibration for proteins, no such procedure is available for RNAs to date. We present here a procedure to analyze and correct the calibration of 13C NMR data of RNAs. Our procedure uses five 13C chemical...
nmrlearner Journal club 0 01-21-2012 06:26 PM
Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News
http://nt1.ggpht.com/news/tbn/pbujffOLTN-5EM/6.jpg SunHerald.com <img alt="" height="1" width="1" /> Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... Genetic Engineering News Bruker and Lawrence Berkeley National Laboratory are collaborating to develop structural biology methods and tools that integrate small-angle x-ray scattering (SAXS) technology with nuclear magnetic resonance (NMR). The aim is to generate a set of data ... Bruker and Lawrence Berkeley National Laboratory Collaborate on Novel ...MarketWatch (press release) all 14 news articles &raquo;
nmrlearner Online News 0 11-11-2011 08:26 AM
Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News
Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News http://nt1.ggpht.com/news/tbn/pbujffOLTN-5EM/6.jpg SunHerald.com <img alt="" height="1" width="1" /> Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... Genetic Engineering News The aim is to generate a set of data analysis algorithms for determining the structures of larger, multi-domain proteins and protein complexes with DNA, RNA or other proteins. The organizations claim that combining the NMR-derived 3-dimensional atomic ... Bruker and Lawrence...
nmrlearner Online News 0 11-10-2011 08:09 PM
[NMRpipe Yahoo group] Re: How to combine 3d varian datasets?
Re: How to combine 3d varian datasets? Thanks Frank, The script below works beautifully- this was one of the emails that only got delivered recently, but as it turns out I had another unscheduled More...
NMRpipe Yahoo group news News from other NMR forums 0 06-21-2011 03:40 PM
[NMRpipe Yahoo group] Re: How to combine 3d varian datasets?
Re: How to combine 3d varian datasets? Thanks! That is exactly the kind of thing I was looking for. Tara In the end I did manage to combine my datasets by a very clunky method. It appears that as More...
NMRpipe Yahoo group news News from other NMR forums 0 01-29-2011 05:31 AM
[NMRpipe Yahoo group] Re: How to combine 3d varian datasets?
Re: How to combine 3d varian datasets? please find below a small C program that concatenates two parts of a Varian FID file to a single new one. Courtesy of Lewis Kay. The carriage returns in the More...
NMRpipe Yahoo group news News from other NMR forums 0 01-28-2011 04:52 AM
[NMRpipe Yahoo group] How to combine 3d varian datasets?
How to combine 3d varian datasets? Hello, I couldn't find a more recent suggestion that applies to my problem than this, but don't quite see how to go about combining the data. I have two 3D More...
NMRpipe Yahoo group news News from other NMR forums 0 01-21-2011 03:31 AM
[Stan NMR blog] Bye, bye, Varian
Bye, bye, Varian Complete Varian takeover by Agilent Technologies announced on July 27, 2009 More...
nmrlearner News from NMR blogs 0 08-21-2010 05:42 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 11:34 PM.


Map