BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 05-16-2011, 08:22 AM
NMRpipe Yahoo group news's Avatar
Senior Member
 
Join Date: Aug 2010
Posts: 443
NMR Credits: 0
NMR Points: 0
Downloads: 0
Uploads: 0
Default Re: extracting spectral regions from 2D spectra

Re: extracting spectral regions from 2D spectra

Dear Frank, Many thanks for your e-mail and the script. But I am sorry that I could not convey what I wanted to do. Here it is... 1. I have 1H,1H NOESY

More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra
Re: extracting spectral regions from 2D spectra Many thanks to Nicholas and Frank. I tried out the steps posted by Frank and they worked perfectly fine with me. By applying minor variations, I could get the More...
NMRpipe Yahoo group news News from other NMR forums 0 05-16-2011 08:22 AM
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra
Re: extracting spectral regions from 2D spectra Hi Aswani, I was thinking that one way to solve your problem may be to turn your spectrum into a pseudo 3D using something like series.com. Then, you may be More...
NMRpipe Yahoo group news News from other NMR forums 0 05-16-2011 08:22 AM
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra
Re: extracting spectral regions from 2D spectra oops! sorry ... in the script below: "-in test.fid" should be "-in $dirName/test.fid" "-out test.ft2" should be "-out $outName" the corrected script follows More...
NMRpipe Yahoo group news News from other NMR forums 0 05-16-2011 08:22 AM
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra
Re: extracting spectral regions from 2D spectra oo! There are more than a few problems in the script. For one thing, it seems that many lines have a backslash "\" character at the end when they shouldn't, More...
NMRpipe Yahoo group news News from other NMR forums 0 05-16-2011 08:22 AM
[NMRpipe Yahoo group] extracting spectral regions from 2D spectra
extracting spectral regions from 2D spectra Hello, I have H,H homo-nuclear and hetero-nuclear 2D spectra. I wish to extract regions from these spectra (similar to how we extract strip-plots in 3D data). More...
NMRpipe Yahoo group news News from other NMR forums 0 05-16-2011 08:22 AM
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra
Re: extracting spectral regions from 2D spectra Many thanks to Nicholas and Frank. I tried out the steps posted by Frank and they worked perfectly fine with me. By applying minor variations, I could get the More...
NMRpipe Yahoo group news News from other NMR forums 0 05-12-2011 07:41 PM
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra
Re: extracting spectral regions from 2D spectra Working with strips from 2D data would indeed be handy, I'll keep it in mind, and adjust the strip scripts accordingly. In the mean time, Nick's suggested More...
NMRpipe Yahoo group news News from other NMR forums 0 04-15-2011 01:41 PM
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra
Re: extracting spectral regions from 2D spectra Dear Frank, Many thanks for your e-mail and the script. But I am sorry that I could not convey what I wanted to do. Here it is... 1. I have 1H,1H NOESY More...
NMRpipe Yahoo group news News from other NMR forums 0 04-15-2011 01:41 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2022, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 08:30 PM.


Map