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NMR processing:
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Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
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Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
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Secondary structure from chemical shifts:
CSI (via RCI server)
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d2D
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Flexibility from chemical shifts:
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Interactions from chemical shifts:
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Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
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NMR model quality:
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Chemical shifts:
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iCing
RDCs:
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Pseudocontact shifts:
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Protein geomtery:
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PROSESS
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iCing
PSVS
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SAVES2 or SAVES4
Vadar
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NMR spectrum prediction:
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Flexibility from structure:
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Methyl S2
B-factor
Molecular dynamics:
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Chemical shifts prediction:
From structure:
Shiftx2
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CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Unread 08-21-2010, 03:29 PM
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Default Protein NMR: The Thermofluor Assay (0 replies)

Protein NMR: The Thermofluor Assay (0 replies)

Hi everyone! I’m working with a intregal membrane protein over-expresed in human cell lines. My principal problem is to find the optimal conditions for solubilization, I know that my protein is very unstable. Recently I read the paper from Ericcson and colleages about the thermofluor Assay. Despite the low sensibility due to the detergents I need to solubilizate my protein I think the assay will work correctly if I can configure the thermal cicler. I’m using the Bio-Rad MyiQ real time PCR system, but I can’t configure it to correctly read Sypro Orange fluorescence, Anyone has used it? Thanks



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