BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 08-21-2010, 03:29 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,174
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default NMR-Spectra database searchable by biological species (0 replies)

NMR-Spectra database searchable by biological species (0 replies)

We currently set up a project for indentification of microorganisms by NMR-Spectra. I tried to find a web-database which is searchable by species in order to learn what biomolecules could be specific and suitable for NMR-analysis. Unfortunately, I was not very successful. That´s why I would like to ask for help in this forum. Thanks and kind regards from Austria! Dieter



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR images] nmr spectra database
http://www.kollewin.com/EX/09-15-11/nmr.spectrum.gif kollewin.com 13/02/2011 8:55:46 PM GMT nmr spectra database More...
nmrlearner NMR pictures 0 02-21-2011 10:57 PM
Measurement of multiple torsional angles from one-dimensional solid-state NMR spectra: application to the conformational analysis of a ligand in its biological receptor site.
Measurement of multiple torsional angles from one-dimensional solid-state NMR spectra: application to the conformational analysis of a ligand in its biological receptor site. Measurement of multiple torsional angles from one-dimensional solid-state NMR spectra: application to the conformational analysis of a ligand in its biological receptor site. Phys Chem Chem Phys. 2010 Nov 14;12(42):13999-4008 Authors: Edwards R, Madine J, Fielding L, Middleton DA Knowledge of the three-dimensional structure of a ligand in the binding site of its biological...
nmrlearner Journal club 0 02-04-2011 11:34 AM
[NMR tweet] Maven Semantic: Nuclear Magnetic Resonance Database: The new database is now available to marketing, business development, competitor...
Maven Semantic: Nuclear Magnetic Resonance Database: The new database is now available to marketing, business development, competitor... Published by Cheryl_Gates (Cheryl Gates) on 2011-01-18T14:33:38Z Source: Twitter
nmrlearner Twitter NMR 0 01-18-2011 03:01 PM
[NMR paper] Prion protein NMR structure and species barrier for prion diseases.
Prion protein NMR structure and species barrier for prion diseases. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--highwire.stanford.edu-icons-externalservices-pubmed-custom-pnas_full_free.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Prion protein NMR structure and species barrier for prion diseases. Proc Natl Acad Sci U S A. 1997 Jul 8;94(14):7281-5 Authors: Billeter M, Riek R, Wider G, Hornemann S, Glockshuber R, Wüthrich K The structural...
nmrlearner Journal club 0 08-22-2010 05:08 PM
[NMR paper] In vivo 13C and 15N NMR studies of methylamine metabolism in Pseudomonas species MA.
In vivo 13C and 15N NMR studies of methylamine metabolism in Pseudomonas species MA. Related Articles In vivo 13C and 15N NMR studies of methylamine metabolism in Pseudomonas species MA. J Biol Chem. 1991 Jun 25;266(18):11705-13 Authors: Jones JG, Bellion E Pseudomonas species MA was grown with methylamine as a sole source of carbon and nitrogen enabling the total flow of carbon and nitrogen into this organism to be simultaneously monitored in vivo using 13C and 15N NMR. Methylamine was rapidly and extensively incorporated into the methyl...
nmrlearner Journal club 0 08-21-2010 11:16 PM
[Nature network NMR forum] Multivariate analysis of NMR spectra (0 replies)
Multivariate analysis of NMR spectra (0 replies) Hi, I am currently debating the benefit of different multivariate analysis methods for analysing NMR spectra and wondered if anyone had any ideas? I have implemented principal components analysis (PCA) and canonical variates analysis (CVA). I am now looking into partial least squares discriminate analysis (PLS-DA). My data contains a continuum of disease scores which I have categorised as Low Moderate and High. I would like to create a prediction model of disease state. The CVA analysis is supervised, so takes these...
nmrlearner News from other NMR forums 0 08-21-2010 03:29 PM
[Nature network NMR forum] ResearchGATE (3 replies)
ResearchGATE (3 replies) ResearchGATE is a new internet resource for connecting scientists and helping to develop collaborations and share resources and data. They have even promised a biomolecular NMR group! Visit and sign up here More...
nmrlearner News from other NMR forums 0 08-21-2010 03:29 PM
[Nature network NMR forum] NMR Wiki (0 replies)
NMR Wiki (0 replies) Hello, I’ve just found this forum and decided to post a message about NMR Wiki (http://nmrwiki.org) – The Open NMR Project. Users of NMR Wiki can: *search and update the pulse sequence database *create pulse sequence images from wiki text *read and write about theory and practice of spectroscopy, your software and anything else relevant to Magnetic Resonance *insert and cite bibliography in the style of real papers
nmrlearner News from other NMR forums 0 08-21-2010 03:29 PM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 10:37 PM.


Map