BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Unread 10-28-2010, 09:14 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,134
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default How to process and analyze serial 1D data nmrPipe?

How to process and analyze serial 1D data nmrPipe?

Hi all,I am very new to nmrPipe. I want to achieve the following steps. It would be very kind if somebody helps.

I have a 2D bruker data (t2= 4k points, t1= 32 points) and I want to do Fourier transform in the F2 dimension,phase etc. (2) and then extract the 32 spectra as 1Ds and also convert these 32 spectra in ascii format.(3) fit the peaks with a gaussian or Lorentzian function.(4) integrate the peak and save the integrals and time points as an ascii file.

I only managed till the 1st step.Please help..!!



Check if somebody has answered this question on NMRWiki QA forum
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data
Re: 3D cube representation of NMRPipe data Thanks a lot for the script. How do I export the image I obtained from nmrCube.tcl to, say, a postscript file ? Thanks in advance. Best regards, George More...
NMRpipe Yahoo group news News from other NMR forums 0 07-11-2011 07:41 AM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data
Re: 3D cube representation of NMRPipe data As with most any UNIX script, put the contents into a plain text file, make the file executable, and then run it by typing the file name at the UNIX command More...
NMRpipe Yahoo group news News from other NMR forums 0 02-24-2011 11:30 PM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data
Re: 3D cube representation of NMRPipe data Quoting Douglas Kojetin : Here's a script to make a crude 3D cube-display, but no axis labels. I made it, huzzah. cheerful regards, More...
NMRpipe Yahoo group news News from other NMR forums 0 02-18-2011 10:01 PM
[NMRpipe Yahoo group] 3D cube representation of NMRPipe data
3D cube representation of NMRPipe data Hi All, Does anyone know how to make a 3D cube representation of a 3D NMR dataset, such as the HNCO, from data processed in NMRPipe? Thanks, Doug More...
NMRpipe Yahoo group news News from other NMR forums 0 02-18-2011 10:01 PM
[Question from NMRWiki Q&A forum] data processing by nmrPipe
data processing by nmrPipe Hi all,I am very new to nmrPipe. I want to achieve the following steps. It would be very kind if somebody helps.(1) I have a 2D bruker data (t2= 4k points, t1= 32 points) and I want to do Fourier transform in the F2 dimension,phase etc. (2) and then extract the 32 spectra as 1Ds and also convert these 32 spectra in ascii format.(3) fit the peaks with a gaussian or Lorentzian function.(4) integrate the peak and save the integrals and time points as an ascii file.I only managed till the 1st step.Please help..!! Check if somebody has answered this question on...
nmrlearner News from other NMR forums 0 10-05-2010 02:11 PM
[Question from NMRWiki Q&A forum] How to process DOSY data in Mnova?
How to process DOSY data in Mnova? Hi we have a DOSY dataset aquired using Doneshot.c sequence on a varian instrument. Will MNOVA process the dataset? Thanks!
nmrlearner News from other NMR forums 0 08-25-2010 04:37 AM
[NMRpipe Yahoo group] Re: How to process data acquired with varian infinityPlus system by
Re: How to process data acquired with varian infinityPlus system by Hi there, Check out our NMRPipe library on our website. http://www.nanuc.ca/downloads/scripts.php That should help get a start. There is a login but we don't More...
nmrlearner News from other NMR forums 0 08-18-2010 11:15 AM
[NMRpipe Yahoo group] How to process data acquired with varian infinityPlus system by nmrp
How to process data acquired with varian infinityPlus system by nmrp hi, I am new to nmrpipe. I have data acquired with varian infinityPlus system. The data directory contains nine files, the fid is in the 'data' file acq acq_2 More...
nmrlearner News from other NMR forums 0 08-18-2010 11:15 AM


Thread Tools Search this Thread
Search this Thread:

Advanced Search
Display Modes Rate This Thread
Rate This Thread:

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 11:22 AM.


Map